Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01072 ATGGCAACACCCCCAAGGTCCCCACCTAATTCAGATAATCCTCCCGAGGTAACTTCAAAGAGGACTAGACAGTCCACCAAACTTAGATACTTGACGACGAGAAGCTTATATCATCCACGACCGATTGTTAACGTCAATCCCACTACTAGTAGAGGATCGGGGCCCCACAAAGACAAATTTCTCAGTTACCTAGGGGTTGTGGGTAGTTGCATTGCACCAGAGCCAAAAGAAGTACCTCAAGAGTCGTCAGATGTTGGTGACAATTTGATGGGGTTGTATGTGGTTGATGAAGATCAAAATACTCTTCTAGTGGCCTTAGGAAAGGTGTACCCCTCAACATGTACCATACACACTGTTCCTTATGCAGATGAGGTCACTAGAGTGAGTATTATCTCTGTGTACCTGGCTGATGCTAAGGTCCTGCTTCCTACGTCAGAGAAAATAGCCACTACTGTTGAAGGCAAAGCTGATAGAGCTGCACCTCGATGGACTGAAGTTGGGAAGCAATGGAAGACACATTTGTTCTGTTTTGTGAAATCAGTATATGATCTTCAAGGGAGATTGATGTGTTACAAGCAAGACTGGATTGGTGGTCTCACGGCAGGCTTCAGAGAACATGAATATGAGGACTCAGCAGCTAAGGTTGCTGGGAAAGACCAATTGGCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGATGATGAGCAAAAATTGTGTTTCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTGTTGCCCTTCCACCTTATGGTTCTGAAGTATTTATTGGTGGACTTCCTCGTGATGTATGGGAAGATGATTTAAGGGAATTGTGCGAGCCTATGGGTGATATTCTTCTGGTGCGATTAGTGAAAGATAGGGACACTGGAGAACACAAAAGGCTATTCAGGAGATACATAACAGGGAATTTAAGATTATTCATTGGTAATGTTCCAAAAAGTTGGACTCAACATGATTTTAGGAATGTCGATGAAGGTGTTGGTCCCGGGGTTGAAACCATTGAGCTCATAAAGACCTTAAGAAAGGCATACGGTGCTCTCAAAGACTCCACCATGGTTAGCCTAGCCAAGGTCAATAGCGAATACAAGGAATTGTATATTGCAATTGTTAAGGCTACGAGTCACGTAGAATATCCTCCTAAGGAACGTCACGCCAGAAAAATATTCTATGCAACTTCATCACACCAGCCTCGGGCAGATGTAGCTTACTGCATACACACACTAGCCAAGAGGCTTTCAAAGACAAGGAATTGGATAGTTGCTATAAAGACATTGATAGTCATTCATAGAATACTGAGAGAGGGTGATCCTACTTTCAAAGATGACCTCATAACCTATGCGGCTTGGGACTGCTCTGCATGGGTTCGAACCTATGCACTATTTTTAGAAGAAAAGCTTGAATATTTTAGAATCCTAAGATATGACATCGAAGCTGAGTGA 1470 0.4286 MATPPRSPPNSDNPPEVTSKRTRQSTKLRYLTTRSLYHPRPIVNVNPTTSRGSGPHKDKFLSYLGVVGSCIAPEPKEVPQESSDVGDNLMGLYVVDEDQNTLLVALGKVYPSTCTIHTVPYADEVTRVSIISVYLADAKVLLPTSEKIATTVEGKADRAAPRWTEVGKQWKTHLFCFVKSVYDLQGRLMCYKQDWIGGLTAGFREHEYEDSAAKVAGKDQLAEAEKSDIATEFGDDEQKLCFIDEDEKEKHDELVALPPYGSEVFIGGLPRDVWEDDLRELCEPMGDILLVRLVKDRDTGEHKRLFRRYITGNLRLFIGNVPKSWTQHDFRNVDEGVGPGVETIELIKTLRKAYGALKDSTMVSLAKVNSEYKELYIAIVKATSHVEYPPKERHARKIFYATSSHQPRADVAYCIHTLAKRLSKTRNWIVAIKTLIVIHRILREGDPTFKDDLITYAAWDCSAWVRTYALFLEEKLEYFRILRYDIEAE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01072 489 Gene3D - 349 486 IPR008942 -
Gma12g01072 489 CDD ANTH_N 375 479 - -
Gma12g01072 489 MobiDBLite consensus disorder prediction 1 25 - -
Gma12g01072 489 Pfam ANTH domain 375 485 IPR011417 GO:0005543
Gma12g01072 489 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 347 489 - -
Gma12g01072 489 SUPERFAMILY ENTH/VHS domain 376 487 IPR008942 -
Gma12g01072 489 Gene3D - 203 306 IPR012677 -
Gma12g01072 489 PANTHER CLATHRIN ASSEMBLY PROTEIN 347 489 IPR045192 GO:0048268|GO:0072583
Gma12g01072 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 304 IPR000504 GO:0003723
Gma12g01072 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 303 IPR000504 GO:0003723
Gma12g01072 489 SUPERFAMILY RNA-binding domain, RBD 260 344 IPR035979 GO:0003676
Gma12g01072 489 SMART enth_2 373 486 IPR013809 -
Gma12g01072 489 ProSiteProfiles ENTH domain profile. 367 489 IPR013809 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01072 Gma-Chr12 12544256 12551006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01072 183 204 Antiporters AT3G62270 81.818 3.81e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01072 K20044 - gmx:100815975 259.61