Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01062 ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAAGAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGAAAACTCCACAAGATCGAGCAATCAACAAAGCAGTTCTTCGATCAATACCAGATGACTCTGGGAGTTGATATTTGGAACTCTCATTACGAGAGAATGGGAGATTGTCTGAATGAGCTGGGCATGGAAGATCTCAGGCTCCTTGAGGAAGGAATGGACAAGGCCGCCAAGGTTGTTCGTGAGCGTAAGATTCTTGTTGCTTTGACAGGTGAAAAAGGGAAGTTTGATGAGTTGCTTGAGGATAAGGGTGTTAATATATTGATTGATCCAAAGGCCCTTATGAATGTCATTGGAACTAAAATGGATTTTGTAGATGACAAACTAAGGTAA 441 0.4308 MARGKIQIKRIENTTKKANELTVLCDAKVSIIMFSSTGKLHKIEQSTKQFFDQYQMTLGVDIWNSHYERMGDCLNELGMEDLRLLEEGMDKAAKVVRERKILVALTGEKGKFDELLEDKGVNILIDPKALMNVIGTKMDFVDDKLR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01062 146 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Gma12g01062 146 PRINTS MADS domain signature 9 24 IPR002100 GO:0003677|GO:0046983
Gma12g01062 146 PRINTS MADS domain signature 24 45 IPR002100 GO:0003677|GO:0046983
Gma12g01062 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 41 IPR002100 GO:0003677|GO:0046983
Gma12g01062 146 PANTHER APETALA3 69 104 - -
Gma12g01062 146 Gene3D - 7 56 IPR036879 GO:0003677|GO:0046983
Gma12g01062 146 SUPERFAMILY HesB-like domain 102 145 IPR035903 -
Gma12g01062 146 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Gma12g01062 146 PANTHER APETALA3 1 70 - -
Gma12g01062 146 Coils Coil 142 146 - -
Gma12g01062 146 SMART madsneu2 1 46 IPR002100 GO:0003677|GO:0046983
Gma12g01062 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 70 - -
Gma12g01062 146 PANTHER SERUM RESPONSE FACTOR HOMOLOG 69 104 - -
Gma12g01062 146 Gene3D - 57 146 IPR035903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01062 Gma-Chr12 12292696 12295426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01062 1 101 MADS-box Gene Family AT3G54340 45.714 2.50e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma12g01062 SRF-TF 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01062 K09264 - gmx:547720 160.614