Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01058 ATGCTTGCGGTGTCACCTTTGAGGAGCATTAAAGATGAAAAGAACCAAGGAGAGATGGAGGGTAATTTCTCAATGGCAACAACAACAACAACCGGTGATGTTGACTTTGGTGACCTTTCTGAAGGGAACTTGTTGGAGAGCATCAACTTCGACGACCTCTTCGTCGGCATCGACATCAACGGAGATGTCTTGCCGGACCTGGAGATGTTCCATGAGTTCTCCGTCGACGTCAACACCGGCGAGGAATCGTCGGAGATGAACTCATCGGCAGATAACAGCAAAGTTGAGAATGATCAGAATGTCATGATCAACACTGGTCCAAAAAAAGAAGAGGAAGAAGATAAAGCTTCTTGCAATTCTTCGGGTCAAGACTTGGGGTCAATCCGAGGAGAAGAGATTGTGAGCAAGAGAGATGAATCCGTGGTGGTGAATCCAGCACCAAAGGATGGTGGAAAAGGAAGAAAATCTTCATCCGCTCAATCGAAGAATAATAATAGTAGTAATAATGCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACCCCAGAATTGCACAGGCGATTCGTGCAAGCTGTGGAACAGCTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGTCTAACTCGCCATAACATTGCTAGTCACCTTCAAAAATATAGATCTCATAGGAAACATTTGCTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTATGCTGGTGGAGGGAAGAGAGAGGGGAATCCATGGTTAGCACCAATCATGGGTTTCCCACCAATGACCACCCCAATGCACCATTTTAGACCTCTACATGTATGGGGGCACCCTTCTATGTCCTTGGTGCACATGTGGCCTAAGCATCTTTCAAATTCACCACCACTCTTATGGCCGCTATCGCCACCAGCTGTACCACCACAAGACCCTTCATTTTGGCAACAACTGGCTCCTAACGCACTAATCCCAGGAACAGCTTGTTTTCCACAACCTCTGACACCAACGAGATTTGGAAGCGCCCCTGTCCCCGGCATCCCACCCCATGCCATGTACAAAGCAGATCACGGCATTGGCGTCCTTGGTCCCAGTTCCCTCTTGGACTTTCATCCGTCAAAGGAGTGCATAGATGCAGCTATTGGAGATGTTTTATCAAAGCCTTGGCTGCCGCTACCTATTGGACTTAAGGCTCCAGCTCTTGATAGTGTGATGAGTGAATTACAAAAACAAGGAATTCCAAACATTCCACCCTCTAGTGCTTGA 1287 0.4724 MLAVSPLRSIKDEKNQGEMEGNFSMATTTTTGDVDFGDLSEGNLLESINFDDLFVGIDINGDVLPDLEMFHEFSVDVNTGEESSEMNSSADNSKVENDQNVMINTGPKKEEEEDKASCNSSGQDLGSIRGEEIVSKRDESVVVNPAPKDGGKGRKSSSAQSKNNNSSNNAQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLYAGGGKREGNPWLAPIMGFPPMTTPMHHFRPLHVWGHPSMSLVHMWPKHLSNSPPLLWPLSPPAVPPQDPSFWQQLAPNALIPGTACFPQPLTPTRFGSAPVPGIPPHAMYKADHGIGVLGPSSLLDFHPSKECIDAAIGDVLSKPWLPLPIGLKAPALDSVMSELQKQGIPNIPPSSA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01058 428 Gene3D - 172 233 - -
Gma12g01058 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Gma12g01058 428 Pfam Myb-like DNA-binding domain 178 227 IPR001005 -
Gma12g01058 428 MobiDBLite consensus disorder prediction 78 104 - -
Gma12g01058 428 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 428 - -
Gma12g01058 428 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Gma12g01058 428 MobiDBLite consensus disorder prediction 154 174 - -
Gma12g01058 428 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 428 IPR044825 GO:0003700|GO:0045893
Gma12g01058 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 175 229 IPR006447 GO:0003677
Gma12g01058 428 MobiDBLite consensus disorder prediction 1 29 - -
Gma12g01058 428 MobiDBLite consensus disorder prediction 78 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01058 Gma-Chr12 12105569 12110860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01058 1 303 G2-like Transcription Factor Family AT5G44190 44.373 1.69e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma12g01058 Myb_DNA-binding 5.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01058 - - gmx:100777595 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01058 12 12105569 12110860 Gma12g01058 12 12105569 12110860 ECH