Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01049 ATGGCGAAGGAGAAGAAAAACTTGTCCAACAAGAACAAGAAGCCAAGCAATGCAGACGAGGTTCACTTCCGCGGAGTCCGGAAGCGCCCCTGGGGCCGCTATGCCGCCGAGATCCGCGACCCTGGAAAGAAGACCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGATGCCGCCCGCGCCTACGACGTCGCCGCCCGAAACTTCCGTGGCCCCAAAGCCAAAACCAACTTCCCCTTCCTCCCCGACAACAACACCAACGTTAACCTCAACAAGAAGAACAACAACGTTAACGTTAAATCTGACAGTCCCAGCCAGAGCAGCACCGTGGAGTCCTCCACCCCGGAGCGTGAATTCACGCGCCGCGCCGCCCCCGCCGCAATGGATCGCTTTCCGTTCCTACCCATCCAGCAGCAAATCCTCGTGACCCACCCCGTCGCACCCATGCGCCCGGTTTACTTTCTCGACCGGGCCCACTTCATGACCCAGCCCTTCCCACTCCGATTCGAACCGGGTCCGGTCCAGAGCGACTCCGACTCGTCCTCCGTCGTCGTCGATTGCCAGCCCAAAAGAGAGCTCAATCTCGATCTTaACTTGGCTCCACCTAATGAATATTAA 618 0.5939 MAKEKKNLSNKNKKPSNADEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDVAARNFRGPKAKTNFPFLPDNNTNVNLNKKNNNVNVKSDSPSQSSTVESSTPEREFTRRAAPAAMDRFPFLPIQQQILVTHPVAPMRPVYFLDRAHFMTQPFPLRFEPGPVQSDSDSSSVVVDCQPKRELNLDLNLAPPNEY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01049 205 MobiDBLite consensus disorder prediction 1 24 - -
Gma12g01049 205 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Gma12g01049 205 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 17 187 - -
Gma12g01049 205 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 MobiDBLite consensus disorder prediction 79 114 - -
Gma12g01049 205 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gma12g01049 205 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Gma12g01049 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 187 - -
Gma12g01049 205 MobiDBLite consensus disorder prediction 74 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01049 Gma-Chr12 11894047 11894664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01049 20 202 AP2-EREBP Transcription Factor Family AT5G44210 52.105 4.55e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma12g01049 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01049 K09286 - gmx:100775465 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01049 12 11894047 11894664 Gma06g02159 06 38835139 38835813 ECH
Gma12g01049 12 11894047 11894664 Gma13g02430 13 39046212 39047198 ECH
Gma12g01049 12 11894047 11894664 Gma12g01049 12 11894047 11894664 ECH
Gma12g01049 12 11894047 11894664 Gma15g00730 15 6014684 6015615 ECH