Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01048 ATGAGTAGTGTTTTTTCAgAACACAAATTCCAACTTCAACCCTCTCACCAACTTCTCTCCCTCAAGAAATCCCTGAGGGACATAGACATCCCAGTCCCACCAAGGAAGCTCCTCACCCGCCGCTCCGCCGCCGTCCACGACGTCTCCGGCGACATGTTTTCCGATGACACCCTCCGGCACAAGTACCTTCCCCACAATGGCTCCACCGACTCCTCCGACGATGACTCCGGCGACCCCTACGCCTCCGATCAATTCCGCATGTTTGAGTTCAAGGTCCGGCGCTGTACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCATTTGTACATCCCGGCGAGAAGGCCCGCCGTCGGGACCCTCGCCGGTTTCATTACTCTGCAACAGTCTGTCCAGAGTTTCGCCGCGGTCAGTGTGACCGTGGCGATGCATGTGAGTTTTCTCATGGGGTGTTTGAGTGCTGGTTACACCCTTCTAGGTATAGAACCGAGGCTTGCAAGGATGGTAGGAATTGCAAGCGAAAAGTTTGCTTCTTTGCTCACACCCCTCGCCAACTCAGGGTTTTGCATTCCAATGAAAATAGCAACAAGAAAAAGTGCACCAATATGAGCCCTCATAACAACAACAACAACACCAACAATTGTTGTTTGGTTTGCCATTGCTCTTCTTCTACTCGTTCACCAACTTCAACCTTGTTCGGCATGTCTCATTTTTCTCCTCCATTGTCACCACCTTCTCCTTCTTCCCCTTCTAGGTTTGAGACCAACCATCATCATGGTGTTGTGAAATATAATAAGGATGTGCTCTCTGAGCTTATGTGTTCCATGGAGGGTTTGAATTTTGGTGAGGCTTCACTTTTGTCTGCTGCTTCTAAGCCTCACAACAATTTGTCTTCTTGGCTTGATGTTTCTGAGGATCACAATCAAAAACAGTTCAGTACTCTTTCACCAACCATCACTGCTTGTGGAAGCTTTTCCAACAACGGAAATGGGAGATTTTTGAGAGAAGAAAGTGGGGTTGTTGATGATGTTATTTCCCCAGATCTCGCATGGGTGAATGAATTACTGATGTAG 1071 0.4874 MSSVFSEHKFQLQPSHQLLSLKKSLRDIDIPVPPRKLLTRRSAAVHDVSGDMFSDDTLRHKYLPHNGSTDSSDDDSGDPYASDQFRMFEFKVRRCTRSRSHDWTDCPFVHPGEKARRRDPRRFHYSATVCPEFRRGQCDRGDACEFSHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRVLHSNENSNKKKCTNMSPHNNNNNTNNCCLVCHCSSSTRSPTSTLFGMSHFSPPLSPPSPSSPSRFETNHHHGVVKYNKDVLSELMCSMEGLNFGEASLLSAASKPHNNLSSWLDVSEDHNQKQFSTLSPTITACGSFSNNGNGRFLREESGVVDDVISPDLAWVNELLM 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01048 356 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 31 355 - -
Gma12g01048 356 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Gma12g01048 356 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Gma12g01048 356 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Gma12g01048 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Gma12g01048 356 PANTHER UNKEMPT FAMILY MEMBER 31 355 IPR045234 -
Gma12g01048 356 Gene3D - 124 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01048 Gma-Chr12 11855209 11856549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01048 80 243 C2H2 Transcription Factor Family AT5G12850 48.780 4.31e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma12g01048 zf-CCCH 3.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01048 K23047 - gmx:100820375 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01048 12 11855209 11856549 Gma12g01048 12 11855209 11856549 ECH