Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01045 ATGCCTGCTCAGAAGCGTTCCTTCCCTGATGCTCCTAACGATCACCACCGTCACGCCAAATATCACCACCaagaagaagaagaagaagaagaagaTAATTACAAATCAGATGGTTCGGCTTTGTATGTGTTTGTAGAACTTCTGGAAATACGCAAAGAAGTCCAATGTCCAATTTGCCTAGGTATTATTAAAAAAACACGTACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACACACTGTGCCAGCCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCTTAATTGCAGCTTTATATCCTAATATTGAGAAGTATGAAATAGAGGAGCTTCAATTTTGTGAAGAGGACAAGAACCGCAATAAGCAGATTCAGGCTTCAATTGCAAAAGTTGCTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTTCATTTGTGACAAGATCACAGCGCAATCAACAAAATGTTCTCTCTAGGAGACAAAACCAAGTGATAGATAATCAAGGATCTGAAGATAATGAGGATGAAAATGACAATAATGAAAAGGACTCATCTTCCACAGATGAGCGATGTACAGAACTCAGGCAGAGAAGGCGAAAGAGGCAGACCAGAGGTCGTCCTTCTCAGCCCTCATCATCAACAGCTAGTCCTGATGGTGGATGCATAGAAAGTGACATGGATATAAGAATTTCTTCTAGACCGGTGTCAAAACCTCAAAAATTAACTTGGGGAGGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAATGGTAGCAATAGCAAAAGTTCCCGTAGTAGTCGCATGGCTAAGTTAGTTGATTATCTCCGTAGCTTGAATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTTTGTCTTTGGACAAACAAAGTACACCAAGCTTGCAGCAGCCACACCTTTGCTGTCGGCCAACATTGTCTGTGAAGCACCTTTGTGAATATGTTGCTCATCAGACACCTTTGCCGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACAGTTTGTGACAAGTCATTTGATGAAACTTCATCCTCTGATGAGCTAACTACGCTAGTTATAGATCCTAGCAAAGATGAACTGGAAACTCTGCAAGGGCATGAATCTTTGGCAGGGATTAAATCCAAATGCATATCTAAAAGGGAGCATTTGATTCTGGCATACAGGAGGAAGGAATGA 1287 0.4188 MPAQKRSFPDAPNDHHRHAKYHHQEEEEEEEDNYKSDGSALYVFVELLEIRKEVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIEKYEIEELQFCEEDKNRNKQIQASIAKVAQRQSEALVKRRRDTPGSFVTRSQRNQQNVLSRRQNQVIDNQGSEDNEDENDNNEKDSSSTDERCTELRQRRRKRQTRGRPSQPSSSTASPDGGCIESDMDIRISSRPVSKPQKLTWGGGGFRSHTRHGSGNGSNSKSSRSSRMAKLVDYLRSLNENTDELDVHLILLSLDKQSTPSLQQPHLCCRPTLSVKHLCEYVAHQTPLPVEEVEILAVKGCCSTVCDKSFDETSSSDELTTLVIDPSKDELETLQGHESLAGIKSKCISKREHLILAYRRKE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01045 428 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Gma12g01045 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 22 428 - -
Gma12g01045 428 ProSiteProfiles Zinc finger RING-type profile. 56 96 IPR001841 -
Gma12g01045 428 SUPERFAMILY RING/U-box 45 127 - -
Gma12g01045 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 126 IPR013083 -
Gma12g01045 428 CDD RING-HC_RING1_like 56 96 - -
Gma12g01045 428 MobiDBLite consensus disorder prediction 277 292 - -
Gma12g01045 428 Pfam Zinc finger, C3HC4 type (RING finger) 55 95 - -
Gma12g01045 428 MobiDBLite consensus disorder prediction 9 29 - -
Gma12g01045 428 MobiDBLite consensus disorder prediction 169 192 - -
Gma12g01045 428 PANTHER OS11G0578200 PROTEIN 22 428 IPR044592 -
Gma12g01045 428 SMART ring_2 56 95 IPR001841 -
Gma12g01045 428 MobiDBLite consensus disorder prediction 153 292 - -
Gma12g01045 428 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01045 Gma-Chr12 11806622 11812609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01045 49 119 C3H Transcription Factor Family AT3G23060 35.135 9.43e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01045 K10695 - gmx:100819311 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01045 12 11806622 11812609 Gma12g01045 12 11806622 11812609 ECH