Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01042 ATGGCTTCAGCTTCAGCATCTTATTCCTTTACCATTACTGTGTTATTCCTCCTTTATTTGCACTTGTCATGTTTCATAAATAACCTTAATGCAAATCATACCAATGCCAGCGGTCACAACCATCACAAACACCAACACACTCAGAATCCACCCTTAAACTCAAGGCTTGACATGGCTTTTCTTGGGCTACAAGCATGGAAGCAAGTGATCTACTCAGACCCAAATAACTTCACTTCCAACTGGGTAGGTCCTTCAGTTTGCAACTACACAGGTGTGTACTGTGCTCCCTCACTTGATGACCCTAAAGTGACAGTTGTGGCTGGCATTGACCTTAACTTTGCAGACTTAGCAGGGTTCCTACCCAATGAAATAGGCCTTCTCTCTGACCTTGCAGTCCTTCATCTCAGCAACAACCGCTTCTGTGGCATCCTCCCAATGTCCTTCACCAACCTCACTCTACTCTATGAGCTCGACCTTAGCAACAACAGATTTGTGGGACCTTTTCCTTTGGTTGTGCTTTCCCTTCATATGCTCAAATACCTTGACCTCCGCTACAACGAGTTTGAAGGGCCATTGCCTCCTCAACTCTTCAACAACACCATCGATGCCATTTTTGTTAACAACAACCGCTTCAGCAGTACTATTCCACCAAACTTAGGCAAAATCTCAGCTTCTGTAGTTGTCTTTGCCAACAACAAATTCGGAGGGTGTCTCCCCGAAAGCATAGTGAACTTTGCTGACACTTTGGAGGAGCTTGTGCTAATCAACACCAGTTTGTCTGGGTGTTTGCCACAACAAGTAGGCTTTCTCTACAAACTAAGAGTGTTGGATGTGAGTTTCAATAACATTGTTGGCCCTATACCTTATAGCCTTTCAGGGCTGTCTCACTTGGAGCAGCTGAATTTGGGGCATAACATGATGAGTGGCACAGTCCCTGTGGGGGTTTGTGAGTTGCCAAACTTGGCAAACTTCACTTTCTCTTACAACTTCTTCTGTGAGGAAGAGGGTATCTGTCAGAACTTGACATCAAAGAGGATAGTGTTTGATGATAGGAGGAACTGTTTGCCAGAGAAGCCACTGCAGAGGAGTGAAAAGGAATGCAAGGCCAAACTTGAACACCCAGTTGATTGCTCTGAGCTTTGCTGTGTTGTTGGGAGCAATGTCTCTGCTGGCTCAGTGGCTGTGCCACCTGCTGCTGCAGTTCCTGCAGCAATGCCTGTGTCTGCACCTCTTCTTGCACCAAGCCACCCTTAA 1254 0.4601 MASASASYSFTITVLFLLYLHLSCFINNLNANHTNASGHNHHKHQHTQNPPLNSRLDMAFLGLQAWKQVIYSDPNNFTSNWVGPSVCNYTGVYCAPSLDDPKVTVVAGIDLNFADLAGFLPNEIGLLSDLAVLHLSNNRFCGILPMSFTNLTLLYELDLSNNRFVGPFPLVVLSLHMLKYLDLRYNEFEGPLPPQLFNNTIDAIFVNNNRFSSTIPPNLGKISASVVVFANNKFGGCLPESIVNFADTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLSGLSHLEQLNLGHNMMSGTVPVGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPEKPLQRSEKECKAKLEHPVDCSELCCVVGSNVSAGSVAVPPAAAVPAAMPVSAPLLAPSHP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01042 417 Pfam Leucine rich repeat 248 306 IPR001611 GO:0005515
Gma12g01042 417 Gene3D Ribonuclease Inhibitor 61 224 IPR032675 -
Gma12g01042 417 Gene3D Ribonuclease Inhibitor 225 354 IPR032675 -
Gma12g01042 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 416 - -
Gma12g01042 417 PANTHER EXTENSIN-LIKE PROTEIN 1 416 - -
Gma12g01042 417 SUPERFAMILY L domain-like 66 346 - -
Gma12g01042 417 SMART LRR_typ_2 294 318 IPR003591 -
Gma12g01042 417 SMART LRR_typ_2 270 293 IPR003591 -
Gma12g01042 417 SMART LRR_typ_2 127 150 IPR003591 -
Gma12g01042 417 SMART LRR_typ_2 175 199 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01042 Gma-Chr12 11782354 11783619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01042 53 406 Trihelix Transcription Factor Family AT2G15880 51.695 1.89e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01042 - - gmx:100782629 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01042 12 11782354 11783619 Gma12g01042 12 11782354 11783619 ECH