Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01031 ATGAGCTCCTCTTTCATCATCTCGAATGAGTCCTTTTCGTGGTTATCGACTCGGGATCAGCCACCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCTCTGGAGCTTCTTGGTGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCATGTGTTGCCATGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAATTTTGTGGGAAGATTACTTTCCCTGTTTCCTTGAAGCAGAGACAAATCAAGCTGACATACCACCTCTTCCTTTGCCTTAGTCCTGTCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAATGGACAAGAAGAACAACTTGCACAGAGTATATTATATCAATGAATACAGATAACATATCAAGATCTAGTAGTACTTACATTGGAAAACTGAGATCTAAGACTATTATTTTGGTGTGTGTGTGTGAGAGAGAGCGAATGATGATAAAGGATAAATGGCTTCCTCTCCACACTCTTGCTGCATGTGGAGAATTTTACCTTTTAGATTCTCTGTTGAAGCACAATGTTGATATCAATGTTCTGAAAAATGAAGATTCAGGGCCATTGAAGGAATCCACATCCTTGATTGAGCACCCTGCAGAACTAGTCAAGCTGACAGAGCAATCACTTCTTCTCAAGAAAAGGACAAACCAAACAAAGCCCAGGCCTATAGTAGTGAGATTGGATGATGGAGATGTGGCACCAATTTCAGTCAAAAGACCAGAGCCAATGGATGATATTGTATTGAATTACAAGCAAGTGGGAATGAGAACATTATTGAAAGTATTCTCCTTAGTTGGCTCATGTTGGAGTATTCTCCCTTCTTCCTCTGTATCTTCTAATGGCTATGTGGTGTTATCATTATTGAAAGTTTTATGCATTTCTCAGGAATTTGATTTCTTCTACTTTGTTCAGCAGTGGCCAGGAGCATACTGTGACACAAAGCAGAGCTGCTGCTATCCTAAGACTGGGAAACCTGCTATCTATCATATTTTGGTGCTAGAGGGTTCCTTCTCTCTCTCGTTCACGGTGAATTGTGCCTCTTCTTCCATTGCGTCGTGCGCTGCCGCCGCCGTTGCCCCTCTCGGCCTCTCCGCCTCTTCCCTTCCACCGTTCCACGGCTTTGTTGAGatgtgccggaagtggtggtgcgacatcagcttcagaattatgttagaaatgtttgatgtgatccaaaatttgcaaagttaa 1272 0.4049 MSSSFIISNESFSWLSTRDQPPVIQNSRWASLPLELLGDVINRLEASESTWPGRKHVVACVAMCKSWREMCKEIVSSPEFCGKITFPVSLKQRQIKLTYHLFLCLSPVLLVENGKFLLSAKWTRRTTCTEYIISMNTDNISRSSSTYIGKLRSKTIILVCVCERERMMIKDKWLPLHTLAACGEFYLLDSLLKHNVDINVLKNEDSGPLKESTSLIEHPAELVKLTEQSLLLKKRTNQTKPRPIVVRLDDGDVAPISVKRPEPMDDIVLNYKQVGMRTLLKVFSLVGSCWSILPSSSVSSNGYVVLSLLKVLCISQEFDFFYFVQQWPGAYCDTKQSCCYPKTGKPAIYHILVLEGSFSLSFTVNCASSSIASCAAAAVAPLGLSASSLPPFHGFVEMCRKWWCDISFRIMLEMFDVIQNLQS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01031 423 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 16 162 - -
Gma12g01031 423 PANTHER TUBBY-RELATED 16 162 - -
Gma12g01031 423 Pfam F-box domain 29 76 IPR001810 GO:0005515
Gma12g01031 423 Coils Coil 418 423 - -
Gma12g01031 423 Pfam Tub family 92 155 IPR000007 -
Gma12g01031 423 Gene3D - 312 357 IPR036430 GO:0003723|GO:0033897
Gma12g01031 423 Gene3D Tubby Protein; Chain A 68 158 IPR025659 -
Gma12g01031 423 SUPERFAMILY Ribonuclease Rh-like 313 347 IPR036430 GO:0003723|GO:0033897
Gma12g01031 423 SUPERFAMILY Tubby C-terminal domain-like 79 155 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01031 Gma-Chr12 11640337 11649283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01031 23 153 TUB Transcription Factor Family AT1G76900 66.207 1.71e-57 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gma12g01031 Tub 2.7e-17 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01031 K19600 - gsj:114420457 296.589