Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01016 ATGGGCTGCATATGTTCTAAGGCTTCAGCTGTAGAGGACAGCAAGGAAGCTGTCACTGAGAAATTTCAATCGTATAGCACAAGGCCTTCGGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAGGGTGGGGTGAAAGATGTGTTAATAGTTGGTGGTCATGTGAAAGGTTCATTGATTGACAAGAAGGCCAACGGTTCAGGCCAGTTGTATGGTGATCATGATGCAAAGAAGAAATTAGAGAAGCTGGAATTGACTGTTGTGGATCATATTGGCCCTGGAAGGGTTCCAAAGGCTATTGAAGGAGAGCAAGTTGCAGCTGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCGAATACGTTTGAGAGGTTGCATAAAATTGGGCAAGGAACTTACAGTACTGTATATAAGGCACGGGATGTGATTAACCAAAAGTTTGTTGCATTGAAGAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTCAAGTTTATGACAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATAATTAAATTGGAGGGCTTGATAACGTCACAGATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGCATCAAATCCTGATATTAAGTTCTCTGAACCGCAGCTGAAATGCTACATGCGGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAGTCTTAAAGATCGCTGATTTTGGTTTGGCAAGTTTTTATGACCCTCAGCACAATGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCCAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATACTGGAAGGCCTATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCACCATCTGACGACTATTGGCTTAAATCGCGGTTGTCACATTCCACAGTATTCAGGCCACCACACCATTATAGGCGTTGTGTTGCAGATACATTTAAGGACTACCCATCTACTGCGGTAAAGCTTATAGAGACCCTACTTTCTGTAGAGCCAGCACATCGAGGGACTGCAGCAGCTGCTCTGGAAAGTGAGTTCTTTATGTCGGAGCCTCTGCCTTGTGACCCATCAAGTTTGCCAAAATATGTTCCCAGCAAGGAGATTGATGCTAAATTACGGGATGAAGCCGTAAGGCAAGGAGTTGTTGGAGGTAGGGAACAAAAAGTTGCCTCAGGAGTTAGACAAGAAAAAGGACACAGGGCAAATGTCACAGCAAAAGACAATGCTGACCCAGGCTTAGCAGTGCAGCAAGGACACTGTTCCAGCTCAAGGAACCAAAGTGAATTATCAAACCCTCATAGAGGATCGGTGTCTGGAATTCTGGTTTTCCCTCACAAACAGTCAGAAAAAGAAATGAATGATAATTTCTCTGGGCATCTTTATAAGAGGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGTCTGGGCAAAAGGCAGGAAAGAAGTTGATGATGTGCCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTCTCTGAAGATCAGGAGGTTAAACCAGTTCACTCGAACCACAGAAAACCAATTGAAGTAAGAAAATCCGTGGAGTCCACTAATGGATCAGAGTCGAGAAGAAGGCACGATCAAAAACAGATTGTTGATCTCAATCAAATTGAAAGTAGAAGGGTCCCGGCTGAAAAATCAACTCCGGGTGGGCGCGAGTCCATGGGAAACAAGATATACCTCTCAGGTCCATTAATGGTTTCGTCAAGCAACATGGATCAGATGCTCAAAGAGCATGACAGAAAGATCCAAGAGTTTTCAAGACGAGCCAGAATTGACAAGTCAAGAGCAAGAGTTTACTAG 2067 0.4412 MGCICSKASAVEDSKEAVTEKFQSYSTRPSELNVLRLNSTRRVDEGGVKDVLIVGGHVKGSLIDKKANGSGQLYGDHDAKKKLEKLELTVVDHIGPGRVPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVINQKFVALKKVRFDNLDPESVKFMTREIHVLRRLDHPNIIKLEGLITSQMSRSLYLVFEYMEHDLTGLASNPDIKFSEPQLKCYMRQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFYDPQHNVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDDYWLKSRLSHSTVFRPPHHYRRCVADTFKDYPSTAVKLIETLLSVEPAHRGTAAAALESEFFMSEPLPCDPSSLPKYVPSKEIDAKLRDEAVRQGVVGGREQKVASGVRQEKGHRANVTAKDNADPGLAVQQGHCSSSRNQSELSNPHRGSVSGILVFPHKQSEKEMNDNFSGHLYKRPSHSGPLVPGSVWAKGRKEVDDVPPVSNRVNLSKLSGLVASRTFSEDQEVKPVHSNHRKPIEVRKSVESTNGSESRRRHDQKQIVDLNQIESRRVPAEKSTPGGRESMGNKIYLSGPLMVSSSNMDQMLKEHDRKIQEFSRRARIDKSRARVY 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01016 688 MobiDBLite consensus disorder prediction 487 506 - -
Gma12g01016 688 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Gma12g01016 688 MobiDBLite consensus disorder prediction 582 622 - -
Gma12g01016 688 PANTHER CYCLIN-DEPENDENT KINASE 1 679 - -
Gma12g01016 688 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Gma12g01016 688 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01016 688 MobiDBLite consensus disorder prediction 462 476 - -
Gma12g01016 688 MobiDBLite consensus disorder prediction 459 508 - -
Gma12g01016 688 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Gma12g01016 688 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01016 688 MobiDBLite consensus disorder prediction 581 646 - -
Gma12g01016 688 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01016 688 CDD STKc_CDK9_like 135 419 - -
Gma12g01016 688 PANTHER CELL DIVISION PROTEIN KINASE 1 679 - -
Gma12g01016 688 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Gma12g01016 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01016 Gma-Chr12 11393921 11400064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01016 127 461 Core Cell Cycle Gene Families AT5G10270 48.000 6.63e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma12g01016 Pkinase 1.4e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01016 - - gmx:100814156 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01016 12 11393921 11400064 Gma06g02622 06 49558005 49563793 GST
Gma13g02625 13 41028215 41033580 Gma12g01016 12 11393921 11400064 PCT
Gma12g01936 12 39984001 39990772 Gma12g01016 12 11393921 11400064 PCT
Gma12g01016 12 11393921 11400064 Gma13g02625 13 41028215 41033580 PCT
Gma12g01016 12 11393921 11400064 Gma12g01936 12 39984001 39990772 PCT