Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01000 ATGACAGATAGAAATATGAAAAGAGAAAAAAATAGTTGCACCCTCCAAACACAAACTGATTCCCTTGTCTTTTCATCTAATTGCTTGGTCTTTAATGGACGCGCTTTAACTTTACGCACGGAAACTGATAAGGTTCAGGAGAGTGTGCACCAAAAAGGAAATTGGAAATCTTCCAGTGAAATCATTGCAGATTCTGGTAGAAATGCCTCTGGTAGCTTTGACTGCAACATCTGCCTGGAGTGTGTTCAAGATCCAGTGGTGACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATATAAATGGCTTCATTTTCAAAGCACCTCTTTGGATAATGAAGAGCAACAGAAGCCACAATGTCCTGTATGCAAATCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATACGGCCGCGGCCAAACCACAATACCTTCTAAAGGGAAGCCACATCAAGTAGGGACTGTCATACCACAAAGACCTCATGGTCCCAGAACACACAACATTAGAAGTGTTTCCCAACCGATTTCTCAAAGTTACCATCCCTATAGTAATCCTTATCATCCTCAACAATTCAACTCGATTCCAAGCGGTTACACCTCACCTATGATTAGAACAAGTGGTTCAATAGACAACACATTTGGAATCTTTGGAGAGATGATATATGCAAGGGTATTTGGTAACCACGTGTCAAACCTCCATACATATGCCAATCTTTCGGGGACCAGTAACCCAAGAATGAGAAGACATTTAATTTGCAAGTACTCTAACCCTTTAGCACCGACCTCTGCCATGCCTAAAGAGAGGACCACCGCGAGAGTACTTCCGAAGACATGGGATGCATTAAGCATCAGAAGTCATACCTTATCCATTGCAATGGATGAAACTAGTTGCTGTTGTCCATACTATATTATGCCAGCTATCCTGAAAGTGACTACTAGAGAGGGGGCATGGTATGGCATCTTGCGACAAACAGAAGATCGCTTTAGTGATGATGCAAATGACTTATGGTGGTCCCAGTTCATCAAGCTGTTTGAAGCAAAATTGCCATGGAGACGTTATCTACCATTCACCGGCCTATGGtga 1083 0.4238 MTDRNMKREKNSCTLQTQTDSLVFSSNCLVFNGRALTLRTETDKVQESVHQKGNWKSSSEIIADSGRNASGSFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDNEEQQKPQCPVCKSEVSQSSLVPLYGRGQTTIPSKGKPHQVGTVIPQRPHGPRTHNIRSVSQPISQSYHPYSNPYHPQQFNSIPSGYTSPMIRTSGSIDNTFGIFGEMIYARVFGNHVSNLHTYANLSGTSNPRMRRHLICKYSNPLAPTSAMPKERTTARVLPKTWDALSIRSHTLSIAMDETSCCCPYYIMPAILKVTTREGAWYGILRQTEDRFSDDANDLWWSQFIKLFEAKLPWRRYLPFTGLW 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01000 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 45 251 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gma12g01000 360 Pfam RING-type zinc-finger 75 121 IPR027370 -
Gma12g01000 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 45 251 - -
Gma12g01000 360 CDD RING-HC_AtRMA_like 73 125 - -
Gma12g01000 360 SMART ring_2 75 123 IPR001841 -
Gma12g01000 360 MobiDBLite consensus disorder prediction 143 165 - -
Gma12g01000 360 SUPERFAMILY RING/U-box 74 130 - -
Gma12g01000 360 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Gma12g01000 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 139 IPR013083 -
Gma12g01000 360 ProSiteProfiles Zinc finger RING-type profile. 75 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01000 Gma-Chr12 11040560 11045689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01000 68 232 C3H Transcription Factor Family AT4G27470 42.373 2.08e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01000 K10666 - gmx:100807729 441.425