Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00955 ATGACAGTTGGTTCCTTCTTCATCAGGACCTCCAGGGTTCTCAACTCCTCCAACTTTCTGCTTCTCTGCACTCTCAGTGGTGGTGGTGTAGTGGCATACTCAGAATCACAATCAGGAGCTGAACGTCCTAGTATTGAAGCTAATGAGCCTGCCAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGATCTGGATGCTTCATTATATGATGTTCAAGTTGTTTCACCTCGTAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCGGTCCGAAACATCATTAAAAAGAGAAAAGGAGAAGTGAATTTTTGGGAGGCAGAATGTGTCAAGATTGATTATTCGAACAAAAAGGTTTTCTGTCGGTCCAATATTGACAACTTGGTGGGAAGTAACGAATTTTCCTTGGACTATGACTTCTTGGTTGTAGCAGTAGGAGCACAAGTAAACACTTTTAACACCCCTGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAAGATTAGACTGTCTGTGATTGATTGCTTTGAGAAGGCTGTTCTTCCTAGTCTATCTGATGATGAGCGAAGGTCAAATCTTCATTTTGTAGTTGTTGGAGGAGGTCCAACTGGTGTGGAATTTGCAGCCGAGCTGCATGATTATGTCCAAGAAGATCTAATCAAACTATATCCAACTGTTAAAGATAAAGTGAAAATAACATTGATTCAATCTGGAGATCATATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCGGAGCAAAAGTTTACAAGAGATGGGGTAGAAGTTCAAACAGGATGCCGGGTTGTCGCTGTTAATGACAAGGATATTACAGTGAAGGTGAAATCAACGGGAGATGTTTGCTCGGTGCCCCATGGGTTGATTGTTTGGTCAACTGGTATTTCAACTCTTCCAGTTATAAGGGACTTTATGGAAGAAATTGGTCAGACTAAAAGGCATGTACTAGCAACTAATGAATGGTTGCGTGTGAATGGATGTGAAGATGTGTATGCCATTGGTGACTGTTCTAGCATAACTCAACGTAAAATCATGGATGATATCACAGCCATATTTGAGGCTGCAGACAAAAATAACTCCGGCACCTTAACTATTGAAGAATTCCAGGAGGTGATGGATGACATTATCTTAAGATATCCACAAGTTGAGCAATATCTAAAGCAGAAGCATCTGCGTGATTTTACCACTCTGTGGAAAGATTTGCAAGGGAATGAAAGCAAGGAAATAGACATCCAAGCGTTTAAGCTGGCCCTTTCTCATGCAGATTCACAGGTGAAGAGTCTGCCAGCAACTGCTCAGGTTGCTGCCCAACAGGGTGCATATCTAGCTAGGTGCTTTAATCGCAGGGATCATACTGAAGAGAATCCTGAAGGTCCTCGACGATTTAGCGGATCTGGACGTCATAGGTTTCTCCCCTTCCGGTATAGGCATTTGGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACCAGGGTCTTGGTCATGTCTGATTGGACAAGAAGATTCATATTTGGCAGGGATTCAAGTAGAGTTTAA 1722 0.4321 MTVGSFFIRTSRVLNSSNFLLLCTLSGGGVVAYSESQSGAERPSIEANEPAKKKVVVLGTGWAATSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEVNFWEAECVKIDYSNKKVFCRSNIDNLVGSNEFSLDYDFLVVAVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPSLSDDERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLIKLYPTVKDKVKITLIQSGDHILNMFDERISSFAEQKFTRDGVEVQTGCRVVAVNDKDITVKVKSTGDVCSVPHGLIVWSTGISTLPVIRDFMEEIGQTKRHVLATNEWLRVNGCEDVYAIGDCSSITQRKIMDDITAIFEAADKNNSGTLTIEEFQEVMDDIILRYPQVEQYLKQKHLRDFTTLWKDLQGNESKEIDIQAFKLALSHADSQVKSLPATAQVAAQQGAYLARCFNRRDHTEENPEGPRRFSGSGRHRFLPFRYRHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVMSDWTRRFIFGRDSSRV 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00955 573 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Gma12g00955 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 379 IPR023753 GO:0016491
Gma12g00955 573 Gene3D - 43 429 - -
Gma12g00955 573 Gene3D - 441 573 - -
Gma12g00955 573 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B1, MITOCHONDRIAL 48 573 - -
Gma12g00955 573 Pfam EF hand 379 404 IPR002048 GO:0005509
Gma12g00955 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Gma12g00955 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Gma12g00955 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Gma12g00955 573 SUPERFAMILY EF-hand 332 457 IPR011992 -
Gma12g00955 573 PANTHER NADH DEHYDROGENASE 48 573 IPR045024 GO:0003954|GO:0006116
Gma12g00955 573 SUPERFAMILY FAD/NAD(P)-binding domain 52 270 IPR036188 -
Gma12g00955 573 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Gma12g00955 573 SUPERFAMILY FAD/NAD(P)-binding domain 215 371 IPR036188 -
Gma12g00955 573 SMART efh_1 378 406 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00955 Gma-Chr12 9969150 9974886 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00955 5 573 Chloroplast and Mitochondria Gene Families AT4G21490 64.360 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00955 K03885 - gmx:100793566 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00955 12 9969150 9974886 Gma12g00955 12 9969150 9974886 ECH
Gma12g00955 12 9969150 9974886 Gma06g02663 06 50171582 50174993 GST