Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00954 ATGCGTTGGTCTTCCTTCTATCACACGGCCTCGAGGGTTTTCAATGACTGTCCATCATGGGCCAAGACTGTTGTTGTTTGCAGTGTCATCAGTAGTGGAGGTCTAGTGGCATATTGCGATGCCAAACCAGAATATGTTAATCATGAAAGTAAAAAAAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAATATGAAAAGCAACTCCTATGATATTCATGTTGTTTCACCACGTAACTATTTTGCATTCACTCCATTGTTACCAAGTGTCACGTGTGGCACAGTGGAAGCAAGGAGCGTCGTTGAACCGATTCGCAGCATCACCAGGAAGAGCGGTGTAAATATTCATTTCAGTGAAGCTGAATGCTATAAGATCGATAACAAGAACAACAAAGTTTATTGCCGTGCTAGTAAAGACAAAAAGTTGGGTGGCCAAGAAGACTTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGCCGTTCTAATACCTTCAACACACCTGGTGTTCAAGAGCATGCCCATTTCTTGAAGGAAGTGGATGAAGCTCTAAAAATTCGTCATTCAGTGGTTGACCTTTTTGAAAGAGCTAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAACTTCTGAGTTTTGTAGTAGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCTGAGCTTCATGACTTTGTACTTGAGGATATGGCGAAGCTATATCCTTCCCTTAAAGACTATGTGAAGATTACTCTCCTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAGTTTGCTGAACAAAAGTTTGCTAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAACGAAATTACTGCCAAAGAAAGGGCAAGTGGTCAAGTTGTTTCTATACCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAGTAGTTGAATTTATGAAGCAGCTTGGCCAGGTTAACAGGCGTGCATTGGTCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTCTAGGTGATTGTGCTACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACAAGAACAATTCTGGAAAATTAGATCTTAAAGAATTTAAAGACGTTGTTGGCGACATTATTGAGAGATACCCTCAAGTAGACATTTATTTAAAGAAGAACCAAATGAGAGACATGGCCAGCTTGCTAAAGAAATCTCAAGAGAGCAATATTATAGTGGACATTGAATACTTTAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCACAACAAGGAGTCTATCTTGCAGACTGTTTCAACCGCATGGAGGAGTGTGAGAAGTATCCAGAAGGCCCTCTCAGGTTCAGGGGAGTTGGACGCCATCGGTTCCGTCCCTTCAGGTACAGGCATTTGGGACAATTTGCTCCTCTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAATGGCTCTGGTATTCGGTGTATACAAGCAAACAAGTGAGCTGGAGGACAAGATTTCTTGGCTTGGCACAGCAGAGGTCCACTTCATCTCCTGCAATAAATCAATTTGGACTTTTGAGAAGCTTATACGCTGCTAGTTTACCGGAGACACTGAAACTCAATCCACAAATTATAAAATAA 1785 0.4241 MRWSSFYHTASRVFNDCPSWAKTVVVCSVISSGGLVAYCDAKPEYVNHESKKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSVVEPIRSITRKSGVNIHFSEAECYKIDNKNNKVYCRASKDKKLGGQEDFSIDYDYLVIAMGGRSNTFNTPGVQEHAHFLKEVDEALKIRHSVVDLFERASLPSLPVEEKKKLLSFVVVGGGPTGVEFAAELHDFVLEDMAKLYPSLKDYVKITLLEAGDHILNMFDKRITEFAEQKFARDGIDVRLGSMVVKVGENEITAKERASGQVVSIPHGMVVWSTGIGARPEVVEFMKQLGQVNRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADKNNSGKLDLKEFKDVVGDIIERYPQVDIYLKKNQMRDMASLLKKSQESNIIVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMEECEKYPEGPLRFRGVGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLGLAQQRSTSSPAINQFGLLRSLYAASLPETLKLNPQIIK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00954 594 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
Gma12g00954 594 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Gma12g00954 594 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Gma12g00954 594 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Gma12g00954 594 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Gma12g00954 594 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Gma12g00954 594 SUPERFAMILY FAD/NAD(P)-binding domain 212 372 IPR036188 -
Gma12g00954 594 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Gma12g00954 594 PANTHER NADH DEHYDROGENASE 71 557 IPR045024 GO:0003954|GO:0006116
Gma12g00954 594 Gene3D - 44 409 - -
Gma12g00954 594 Gene3D - 419 560 - -
Gma12g00954 594 PANTHER NAD(P)H DEHYDROGENASE B2 71 557 - -
Gma12g00954 594 SUPERFAMILY EF-hand 369 459 IPR011992 -
Gma12g00954 594 SMART efh_1 379 407 IPR002048 GO:0005509
Gma12g00954 594 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00954 Gma-Chr12 9961131 9967961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00954 1 555 Chloroplast and Mitochondria Gene Families AT4G21490 66.844 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00954 K03885 - gmx:100820044 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00954 12 9961131 9967961 Gma12g00954 12 9961131 9967961 ECH
Gma12g00954 12 9961131 9967961 Gma06g02664 06 50176121 50181401 GST