Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00949 ATGGGAAGAGTTCCTTGCTGTGACAAGAATGGACTCAAGAAGGGTCCATGGACACCAGAGGAAGATCTTAAACTCACCAACTACATTCAGTTTCATGGACCAGGCAATTGGCGATCCCTCCCTAAAAATGCTGGCCTAAAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCCGATATAAAGAGAGGAAGATTCTCCTTAGAAGAAGAAGATATCATCATTCAGTTGCACAGTATCTTGGGTAACAAATGGTCAGCTATAGCATCAAGGTTACCAGGAAGAACCGACAACGAAATAAAAAACTATTGGAACACCCACATTAGGAAGAGGCTACTTCGAATGGGAATTGACCCAGTCACACACACCCCACGCCTTGACCTACTTGACATGTCCTCTATTTTAAGGTCAGTGTTCGGGAAACCCTCCCTTTTGAACATGCAAGGCTTATTACGTGCCCAAGCTTTGATGAACCAAGGGTTACTAAAGCTGGCTTCCACTGCCTCTCTTCTATCAACAATCAACAATGATGAGAACCCAAATTTGGCTTCACACAATTATGTACAAAACCAAGTTACCACCCCACCATCATTAGACTCAGCACAGTTTCAATTTCAAATGCCTACTACTCAGACAAACAATGTGGAAGTCTTCTCGGGCACCGTGGCAAACTTGAGCTGTTCAAGTTCTCCTTCGGGTGATGAGAACCTTGTTTTGCAACAAAACCAAGTTGGTTTGTCAGGGAACCATGATGCTTTGGTGCACTCTCTGAACAATGCAAACCAAAACATGGAGTGTGATTCGGTTCTGCCTACGCCTGTGTCAAGTCCAAACCGGTTGAATTCATCATCCAACTATGTAAGAAGTGGCACGGACGAAGAGAGGGATAGCTTTTTTAGTGACTTGTTCGAGTTTGAAATTCCAGAGAGTTTGGATGACATTGCTGATATTTTTTTGTAA 972 0.4362 MGRVPCCDKNGLKKGPWTPEEDLKLTNYIQFHGPGNWRSLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSLEEEDIIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDMSSILRSVFGKPSLLNMQGLLRAQALMNQGLLKLASTASLLSTINNDENPNLASHNYVQNQVTTPPSLDSAQFQFQMPTTQTNNVEVFSGTVANLSCSSSPSGDENLVLQQNQVGLSGNHDALVHSLNNANQNMECDSVLPTPVSSPNRLNSSSNYVRSGTDEERDSFFSDLFEFEIPESLDDIADIFL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00949 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma12g00949 323 CDD SANT 69 112 IPR001005 -
Gma12g00949 323 Gene3D - 69 116 - -
Gma12g00949 323 CDD SANT 16 61 IPR001005 -
Gma12g00949 323 Gene3D - 13 66 - -
Gma12g00949 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma12g00949 323 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma12g00949 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma12g00949 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma12g00949 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma12g00949 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 316 - -
Gma12g00949 323 SMART sant 66 114 IPR001005 -
Gma12g00949 323 SMART sant 13 63 IPR001005 -
Gma12g00949 323 PANTHER TRANSCRIPTION FACTOR MYB41 1 316 - -
Gma12g00949 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00949 Gma-Chr12 9879010 9880349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00949 1 187 MYB Transcription Factor Family AT4G21440 68.020 1.73e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g00949 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00949 K09422 - gmx:100787592 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00949 12 9879010 9880349 Gma12g00949 12 9879010 9880349 ECH
Gma12g00949 12 9879010 9880349 Gma06g02669 06 50259675 50261243 GST
Gma12g01883 12 39499148 39500341 Gma12g00949 12 9879010 9880349 PCT
Gma12g00949 12 9879010 9880349 Gma12g01883 12 39499148 39500341 PCT