Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00943 ATGGAGTTTGACCTTGAAAACCCTTTAGAAAATCTTCACTCTGATGATGTCTCTTACCTCTTCCTCATTGAATCTGACCACACCCCATCACAGAATCACTCTCAGACTCTCAAAGCTAGAGATCTTGACATCTCTGTCAGAAGAGAACTCATTTCCTTAATCTCACAGTTGTCCTGTGCTTTGGATCCGGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTGACCAACCAAGGGATTCTGCAACCAAAGCCATGGGCCCTGAGGCTCGTTGCTGTCTCTTGCATTTCTCTAACTGTCAAGATGATGGGAACTGAATACCCTGCCACTGATATCCAGGCCCTTTTGAATCAAAGTGATGGTGGCATCATCTTTGAGACACAAACAATACAAAGAATGGAAGCACTCATCTTGGGAGCATTACAATGGAGAATGAGATCGATCACCCCATTCTCTTTCGTAGCTTTCTTTATTGCCTTGATGGGGCTCAAAGAGTCGCCAATGGGGCAGGTTCTGAAAAACCGTGCCTCTGAAATCATATTCAAGTCACAAAGAGAGATAAGGCTTTGGGGATTCAAGCCATCTATAATTGCTGCATCTGCTCTTCTTTGTGCTTCTCATGAGTTGTTTCCTTTTCAATATCCGTTCTTCTTAAAAGCAATATCCGATTCTTCATATGTAAATAAAGAAATCGTGGAGCAGTGCTACAAAGTGATACAAGACATAGCCATAGAGGAAGAGTACTCTTCTGCGTTGAATGGGGTTTCAAGGTCAGACACACCGATTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAAAAACCAACGGAATCACCGTTGCTAATGCTACTGATTCTCCTCTTGGGGATCTCAAAAGAAGGAAAATCACTGGCTGTGGTGGAAACAATCCAACAATCCTCAATTCTTGGATTCAACCATGCGAGAGAGAGTGTGAAAAGTaa 975 0.4267 MEFDLENPLENLHSDDVSYLFLIESDHTPSQNHSQTLKARDLDISVRRELISLISQLSCALDPVLSYLAINYLDRFLTNQGILQPKPWALRLVAVSCISLTVKMMGTEYPATDIQALLNQSDGGIIFETQTIQRMEALILGALQWRMRSITPFSFVAFFIALMGLKESPMGQVLKNRASEIIFKSQREIRLWGFKPSIIAASALLCASHELFPFQYPFFLKAISDSSYVNKEIVEQCYKVIQDIAIEEEYSSALNGVSRSDTPINVLDHHFLSSESEKTNGITVANATDSPLGDLKRRKITGCGGNNPTILNSWIQPCERECEK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00943 324 CDD CYCLIN 47 140 IPR013763 -
Gma12g00943 324 SMART cyclin_7 48 141 IPR013763 -
Gma12g00943 324 Gene3D - 20 239 - -
Gma12g00943 324 PANTHER CYCLINS 5 282 IPR039361 -
Gma12g00943 324 SMART Cyclin_C_2 150 263 IPR004367 -
Gma12g00943 324 Pfam Cyclin, C-terminal domain 150 249 IPR004367 -
Gma12g00943 324 SUPERFAMILY Cyclin-like 132 246 IPR036915 -
Gma12g00943 324 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 5 282 - -
Gma12g00943 324 SUPERFAMILY Cyclin-like 13 147 IPR036915 -
Gma12g00943 324 Pfam Cyclin, N-terminal domain 21 147 IPR006671 -
Gma12g00943 324 Gene3D - 30 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00943 Gma-Chr12 9792774 9794738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00943 1 301 Core Cell Cycle Gene Families AT4G03270 43.711 7.64e-73 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00943 K18812 - gmx:100783875 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00943 12 9792774 9794738 Gma12g00943 12 9792774 9794738 ECH
Gma12g00943 12 9792774 9794738 Gma06g02674 06 50319920 50321920 GST
Gma13g02680 13 41482834 41484854 Gma12g00943 12 9792774 9794738 PCT
Gma12g01879 12 39464176 39465964 Gma12g00943 12 9792774 9794738 PCT
Gma12g00943 12 9792774 9794738 Gma13g02680 13 41482834 41484854 PCT
Gma12g00943 12 9792774 9794738 Gma12g01879 12 39464176 39465964 PCT