Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00927 ATGAAGAAGTGCGAACTGTGTAAAGTTCCGGCGAGGATCTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCTAAGGTTCACAGCGCCAACTTCTTGGTCGCGAGGCACGTGCGAACCCTACTCTGCCGCACGTGTCGTTCTCCCACGCCCTGGAAGGCCTCCGGCGCCTCACTCGCCCACGCCGCCTCCGTCTGCGACCGCTGCGCCGCCGCGGAAGAGACGGAAGAGAGCGAAGCCGGCAATGACGACGAACCAGACACCGAGGACGACGACGATGTCGACAACCAGGTCGTGCCGTGGTCCTCCACGCCGCCGCCGCCGCCGCCGTCGAGCTCCTCCGGCAGCGAATGCTCGGAGTGCAAAAACAACGTTGCTTCTTTTTCCGCCTCGGAACAGGAAACGACAACATCCTCGTTGAAACGACAGCGCGAGGACGACGACGATGCTTCTTCCGATCCTGATCCCAGGGTGTTGAGAAGGGTTGGGCGTCTCAACGGAGGTTGCGTGTGA 522 0.6207 MKKCELCKVPARIFCESDQASLCWDCDAKVHSANFLVARHVRTLLCRTCRSPTPWKASGASLAHAASVCDRCAAAEETEESEAGNDDEPDTEDDDDVDNQVVPWSSTPPPPPPSSSSGSECSECKNNVASFSASEQETTTSSLKRQREDDDDASSDPDPRVLRRVGRLNGGCV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00927 173 PANTHER - 1 155 - -
Gma12g00927 173 MobiDBLite consensus disorder prediction 79 99 - -
Gma12g00927 173 MobiDBLite consensus disorder prediction 76 173 - -
Gma12g00927 173 MobiDBLite consensus disorder prediction 117 140 - -
Gma12g00927 173 SMART bboxneu5 1 45 IPR000315 GO:0008270
Gma12g00927 173 Pfam B-box zinc finger 2 41 IPR000315 GO:0008270
Gma12g00927 173 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 155 - -
Gma12g00927 173 MobiDBLite consensus disorder prediction 141 163 - -
Gma12g00927 173 CDD Bbox1_BBX-like 3 45 - -
Gma12g00927 173 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00927 Gma-Chr12 9453183 9453785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00927 2 94 C2C2-CO-like Transcription Factor Family AT5G54470 57.447 6.00e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma12g00927 zf-B_box 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00927 - - gmx:100789532 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00927 12 9453183 9453785 Gma06g02681 06 50455554 50456718 GST
Gma13g02686 13 41569942 41571540 Gma12g00927 12 9453183 9453785 PCT
Gma12g01872 12 39373757 39375163 Gma12g00927 12 9453183 9453785 PCT
Gma12g00927 12 9453183 9453785 Gma13g02686 13 41569942 41571540 PCT
Gma12g00927 12 9453183 9453785 Gma12g01872 12 39373757 39375163 PCT