Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00920 ATGTTAGTGAAAAACCACAATAAGGGGGATGGATCTAAGTCCCTGGCCGATACACTGGCGAAATGGAAAGAATATAATGCCTGGCTGGAGTCTAACAATGAAGCTGAGAAGCCGGTTAGGAAGGTCCCTGCCAAGGGATCAAAGAAAGGATGTATGAAAGGCAAAGGAGGACCTGAGAACTTGCGCTGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGAAAATGGGTTGCTGAAATCCGAGAGCCAAACAGAGGAAGTAGGCTCTGGTTGGGTACTTTTCCCACTGCCATTAGCGCTGCTCTTGCTTATGATGAAGCAGCGATGGCAATGTATGGTTTCTGTGCACGCCTCAACTTTCCCAATGTTCAAGTTTCAACTTTTTCCGAGGAACCGTCTAGAAATTCTCCAGCTGCTGCTTACCAGTCAAGAAATTCTCCATCTGCTAAAGAATCCGGTTCTGCGTTGGTGATATTAGAGAGGTCTGAGTGCATGATGTTGTGGAACAATTCTGGTGGAGATGCAGCAGAGGATGATGGCATGGAAGACCTTTCCTTATCCTTAAGTGTGAAACATGAGGAAGGGGAGGATGAATCAGGGACCAGTTCTTCCTATCTTTCATTGTCTTGA 630 0.4619 MLVKNHNKGDGSKSLADTLAKWKEYNAWLESNNEAEKPVRKVPAKGSKKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAISAALAYDEAAMAMYGFCARLNFPNVQVSTFSEEPSRNSPAAAYQSRNSPSAKESGSALVILERSECMMLWNNSGGDAAEDDGMEDLSLSLSVKHEEGEDESGTSSSYLSLS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00920 209 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Gma12g00920 209 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma12g00920 209 MobiDBLite consensus disorder prediction 128 149 - -
Gma12g00920 209 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Gma12g00920 209 MobiDBLite consensus disorder prediction 184 199 - -
Gma12g00920 209 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 202 - -
Gma12g00920 209 MobiDBLite consensus disorder prediction 170 209 - -
Gma12g00920 209 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00920 Gma-Chr12 9337758 9338387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00920 2 121 AP2-EREBP Transcription Factor Family AT2G40350 58.871 2.63e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma12g00920 AP2 1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00920 - - gmx:100788110 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00920 12 9337758 9338387 Gma06g02686 06 50511169 50513325 GST
Gma12g01865 12 39288057 39289953 Gma12g00920 12 9337758 9338387 PCT
Gma12g00920 12 9337758 9338387 Gma12g01865 12 39288057 39289953 PCT