Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00894 ATGCAAGCCGGTATTATGATGATTCCGGCGAGAAACATGCCTTCGATGATAGCAAGAAACAACAACGTTGTAGGGTTTTTTGGATCATCTGCACTTTTCACTCTTGCCCAGCCTCTCCGGAACCTTAAAAGATCTATAGCAATAATAATGTTCCAGCCGAACCTGATGGACGCGTTGGAGATGGGTCAGAACACTTCCGAGAGTGAGGTTCCTCGAATCCTAGAAGACGAGTTCGACAGTGCCACCAAGTCCGGTAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACTCAGATGAAGACACAGCACGAGCGGCATGAGAATACAAATCTCAGAACCGAAAACGAGAAGCTTCGAGCAGATAATATGAGGTATAGGGAGGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGAGAAATGTCATTCGATGAACATCACTTGAGGCTTGAAAACGCAAGGCTAAGAGAAGAGATTGATCGCATCTCAGCAATTGCTGCAAAGTATGTAGGGAAGCCAGTGGTGAACTATTCAAATATTTCTCCTTCTCTCCCTCCTCGTCCGTTAGAACTAGGGGTTGGTGGTGCTGGTTTTGGAGGCCAACCAGGGATTGGTGTGGACATGTATGGAGCTGGGGATCTTCTTAGGTCAATTAGTGGACCCACTGAAGCTGATAAGCCAATAATCATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGGATGGCACAAATGGGTGAGCCTCTTTGGTTAACTACCCTTGATGGCACATCCACTATGCTCAATGAGGATGAGTACATTAGGTCTTTTCCTCGAGGGATTGGTCCAAAACCTAGTGGCTTCAAATGTGAAGCTTCAAGAGAAACTGCTGTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATAGTCTCAAGAGCCATGACTCTGGAAGTTCTATCAACAGGGGTGGCTGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAACTACAACTACCTACACCACTTGTGCCAACTCGCGAGAGTTATTTTGTGAGGTATTGTAAGCAACATGCAGATGGGACTTGGGCAGTTGTGGATGTTTCTTTGGATAATTTGCGCCCAGGTCCTTCAGCCAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCACATGGGTTGAGCATGTAGAAGTGGATGATAGAGGTGTTCACAATCTTTACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGGTTGCAACCTTAGATCGACAATGTGAAAGACTCGCTAGTGCCATGGCAACAAACATTCCCACTGTAGATGTTGGCGTGATAACAAACCAAGACGGGAGAAAGAGCATGATGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTCTCTGGGACCGGTGCTGATGATGTAAGGGTTATGACCAGAAAGAGTGTGGATGACCCTGGAAGACCCCCTGGCATAGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCTGTTCCACCTAAACGAGTCTTTGACTTCCTCCGTGACGAAAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGAGGAGTTGTCCAAGAAATGGCACACATTGCAAACGGAAGAGACACAGGAAACTGTGTATCTCTACTTCGAGTAAATAGTGCAAATTCGAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCAATTCAACAGGCTCTTTTGTCATTTATGCTCCGGTGGACATTGTTGCAATGAATGTGGTTCTAAATGGTGGAGACCCAGATTACGTGGCACTTCTTCCTTCAGGGTTTGCTATTCTCCCTGATGGAACCACATCGCATAATGGAAGTGGTGGCATTGGCGAAACTGGCCCTAGTGAGCTTCAAGACTTTTGGATTCTGCGTTGCAGTTTACAAGAAGGATCAACGGGACGCATTGCATTGTGGAAAATTAAAAAGTTGGTGTTGAACCTCGGCTTATATTACAAAGACGGGGAGAAGTCAAGAGCGCACCTTGCATGA 2328 0.4631 MQAGIMMIPARNMPSMIARNNNVVGFFGSSALFTLAQPLRNLKRSIAIIMFQPNLMDALEMGQNTSESEVPRILEDEFDSATKSGSENHEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTNLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLELGVGGAGFGGQPGIGVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTSTMLNEDEYIRSFPRGIGPKPSGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPGPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTNSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTSHNGSGGIGETGPSELQDFWILRCSLQEGSTGRIALWKIKKLVLNLGLYYKDGEKSRAHLA 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00894 775 SUPERFAMILY Bet v1-like 535 712 - -
Gma12g00894 775 SMART HOX_1 102 165 IPR001356 GO:0003677
Gma12g00894 775 Gene3D - 342 512 IPR023393 -
Gma12g00894 775 ProSitePatterns 'Homeobox' domain signature. 136 159 IPR017970 GO:0000981|GO:0006355
Gma12g00894 775 SMART START_1 295 515 IPR002913 GO:0008289
Gma12g00894 775 Pfam Homeodomain 104 159 IPR001356 GO:0003677
Gma12g00894 775 Gene3D - 89 178 - -
Gma12g00894 775 Coils Coil 155 187 - -
Gma12g00894 775 MobiDBLite consensus disorder prediction 80 112 - -
Gma12g00894 775 ProSiteProfiles 'Homeobox' domain profile. 101 161 IPR001356 GO:0003677
Gma12g00894 775 CDD START_ArGLABRA2_like 290 514 - -
Gma12g00894 775 MobiDBLite consensus disorder prediction 80 102 - -
Gma12g00894 775 SUPERFAMILY Bet v1-like 286 517 - -
Gma12g00894 775 SUPERFAMILY Homeodomain-like 92 161 IPR009057 -
Gma12g00894 775 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 727 IPR042160 -
Gma12g00894 775 ProSiteProfiles START domain profile. 286 518 IPR002913 GO:0008289
Gma12g00894 775 CDD homeodomain 104 162 IPR001356 GO:0003677
Gma12g00894 775 Pfam START domain 296 515 IPR002913 GO:0008289
Gma12g00894 775 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 59 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00894 Gma-Chr12 8841636 8848161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00894 50 723 Homeobox Transcription Factor Family AT1G05230 77.180 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma12g00894 START 5e-60 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00894 K09338 - gmx:100782260 1422.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00894 12 8841636 8848161 Gma12g00894 12 8841636 8848161 ECH
Gma12g00894 12 8841636 8848161 Gma06g02708 06 50761129 50767519 GST
Gma13g02729 13 41875663 41881371 Gma12g00894 12 8841636 8848161 PCT
Gma12g01835 12 39021822 39029036 Gma12g00894 12 8841636 8848161 PCT
Gma12g00894 12 8841636 8848161 Gma13g02729 13 41875663 41881371 PCT
Gma12g00894 12 8841636 8848161 Gma12g01835 12 39021822 39029036 PCT