Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00868 ATGGAGTGGCATAGAGGCCACACCATAGGCCAAGGCTCATCAGCCACCGTCTCCACCGCCACGTGCTGCGGTGGTGTCTTGGCTGTCAAGTCATCGGAGCTGCCACAATCAGAGCCTCTGAAAAAGGAGCAGAAAATTTTGTCCTCTCTAAGTAGTCCTTATGTGGTTGCATACAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTCGGCACGCTTGCTCAGGCGACTCGCCGGTGCGATGGTCGGCTCCAGGAGCCGGCCATTGCATGCTACACAAGGCAAATCGTGCAGGGGCTGGAGTACCTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTAATTGGTGAAAATGGGGCCAAAATTGGTGACTTGGGGTGTGCCAAGAGTGCGGCGGATTCCACGGGGGCGATCGGCGGCACACCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGTACTGTGATTGAAATGGTAACCGGTGGTGCACCATGGCCTAATGTGGAAGACCCTTTTTCAGTGCTTTATCACATTGCATATTCTAGTGAAGTGCCCGAGATTCCTTGTTTTCTATCCAAAGAAGCAAAGGATTTCTTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTATTGAAGCATCCATTTATTGAGAAATTGTGTTTCAATAAGGAGGTTTTGGAGTCTAATACAAGTTCCCCAACAAGTGTTCTTGAGCAAGGCTATTGGAGTTGTGTGGAAGAGTCAGAGAGTTTAGGCGATTTGATTCACAAAACAAGAAAGTTTGAAACTTTGGCTGCCGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTGCCCTATTGGGCAAGACATGATGATGAGAATTGGATCACAGCAAGAGGGAATGGGGTTGAAGGTTTTGCCAATTGTGGGGCAGAGACAGCTTCTTCTGCCAGTCATGGGTTGTCTCACTAG 1059 0.5014 MEWHRGHTIGQGSSATVSTATCCGGVLAVKSSELPQSEPLKKEQKILSSLSSPYVVAYKGCDITMENNKLLFNLFMEYMPFGTLAQATRRCDGRLQEPAIACYTRQIVQGLEYLHSKGLVHCDIKGANILIGENGAKIGDLGCAKSAADSTGAIGGTPMFMAPEVARGEEQGCASDIWSLGCTVIEMVTGGAPWPNVEDPFSVLYHIAYSSEVPEIPCFLSKEAKDFLGKCLRRNPQERWKASELLKHPFIEKLCFNKEVLESNTSSPTSVLEQGYWSCVEESESLGDLIHKTRKFETLAAGRVRMLALSSGVPYWARHDDENWITARGNGVEGFANCGAETASSASHGLSH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00868 352 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00868 352 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Gma12g00868 352 Pfam Protein kinase domain 4 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00868 352 CDD STKc_MAPKKK 2 251 - -
Gma12g00868 352 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00868 352 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Gma12g00868 352 SUPERFAMILY Protein kinase-like (PK-like) 3 276 IPR011009 -
Gma12g00868 352 PANTHER MAP KINASE KINASE KINASE 1 334 - -
Gma12g00868 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gma12g00868 352 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00868 Gma-Chr12 8459903 8460961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00868 1 330 MAP Kinase Kinase Kinase AT1G05100 50.565 2.11e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma12g00868 Pkinase 2.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00868 K20716 - gmx:100819665 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00868 12 8459903 8460961 Gma12g00868 12 8459903 8460961 ECH
Gma12g00868 12 8459903 8460961 Gma07g02527 07 47604855 47606538 ECH
Gma12g00868 12 8459903 8460961 Gma06g02730 06 51083845 51085170 GST
Gma13g02742 13 42031848 42033044 Gma12g00868 12 8459903 8460961 PCT
Gma12g01821 12 38826081 38827295 Gma12g00868 12 8459903 8460961 PCT
Gma12g00868 12 8459903 8460961 Gma13g02742 13 42031848 42033044 PCT
Gma12g00868 12 8459903 8460961 Gma12g01821 12 38826081 38827295 PCT