Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00855 ATGAGATATGTGGCTGTGCAGTTGTATGCAGCTCATAATAGTGATGCAGGAAGGATGGGATATTTTTTGGTGCAAGTAGTATTGTTTCGGAGGAAGCCATATGTGATTATTTCTGTGGTGGCATTAGAAAAAGCTGGGACTTCAGAGATTTTAGCCATCCTACCCGGATATCCTGACAATGTGAGAGTCAATGAAGAAGGTGATTTTTGGGTAGCTCTTCATTGTAGAAGATATATGTTTGCATACTACAATGGTATCTACCCAGAGATAAGGAAAATCATACTCAAGCTTCCTATACCGATAAAGATTCAATACCTGATTCAAATAGGAGGTCACCAACATGCAGCAGTTATCAGGTATAGCCCTGAAGGTAGACTTTTGCAGATTTTGGAGGACAGTGAGGGGAAAGTTGTTAAAGCAGTGAGTGAAGTGGAGGAGAAGGATGGTAAACTATGGATGGGAAGTGTTCTTATGCCTTTTGTTGCGCGAGGGTCACAACACAACACACTCGTTCAGCTTGTTGGAGCAAAGTTTTCTCTGTTCTCCCGCCTCAACCTCAACGCACAAATGAGTGATATAAGGAAGTGGTTCATGAAAACACATGACAAGGGCAACAATGCCGCTTCCTCCAAGCCTTCCAATCAACCTAAGCCTTCTTCCGATAAACCCCAGTCCGAGAAAACGGTGGCTGGAGGTCAGGAAAGTTCAGGGAGGAGGATAACTAGCAAATATTTTAATTCTAACAAGCAAAAGGGGAAAGACAAGAAAGAAATGCAGGAGCTCCCTGCTAAAAGAAAGAATATGAAGGACAGTGAGGAAATACCGGAGCCAAAGAAAATTCATGAAGATGATGGAGATGACTCTGTGTTGCCCACTAATAAAAAGAAGTTAGCTGACACCACTCCAACAAAGAAGTTGAAGAGTGGATCAGGTAGGGGGCTTCCCCAGAAATCTGCAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCTGCTGCTAAATCTGCTGGAAGGGGTGATGGTGGAAGAGGAGCACCAGGGCGATCAACTAGTGGGAGAGGTAGAGGGGGTGGGAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTAGCTGGCTTGACTTTTGTGATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGCGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAACAGCTAGGAACTTCCTTCCTCACAGAGGATGGTTTGTTTGATATGATTCGTGGCTCAAAACCTGCAAAAGCTCCTTCACAAGAAGACAAGAAACCTGTGAATAAGGCTGTTGCAGTAGCATCCCAGTCAAAAGTTTCTCCGAAATCACAAGTTAAGGTCCCTCTGTCTTCACGCTCACCTTCTAACCAAGCCAAGCCAAAGACTGCTACTACTGTTCAGTCTTCTTTGATGTGGACTGAAAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAATCAGTCACTTGTTTTACAGCTTCGTAATTGGTTGAAAGCTTGGAATGAGCATTTTTTGGACACTGGTAACAAAAAGCAGGGAAAAAAGCAAAATGACTCTGGTTTGAAAAAAGCTGTCTTGTTAAGTGGAACTCCTGGTATTGGAAAAACAACTTCTGCGACGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAACTTGTAACCAACGAGGCCATTGGTATTAATATGGGACGGTCAAAGCATTACAAATCTGTGCTCATTATGGATGAAGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAAGACTTCAAGTTAATGAGATTGCACTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAGTATATGAGCCTCTCTATGTCAATTATCAACTATGATGATATTAGGCAGCGCTTTCTTACCAATGCAAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAAAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTATTATCCAGGAAAATTATATTAATTATAGACCAAGCATGGCTGGTAAGGATGACAGTGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCTACAAGCATAATTCCTGCGTCATTGTTACACGGGCAGAGGGAAATACTTGAACAGGGAGAGCGAAATTTCAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCGACAATGGGCAAAAACTTACGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCATGGAATACCTTACTCTTCTTCTTAAACAAATGACAGAGACCCTGCGAACCCTGCCCAAGGCTGAAGCAGTTCAGCAAGTTGTGGAATTTATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATTGTAGAGTTGTCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGAATACAAAGAGCAAAGCACATCTCGAGTTGTTCGAGTTGCAGATCTAATCACTCTTCCTGGAGTAAAGAAGGTCCCTAAGAAGCGTATTGCTGCTATTCTGGAACCAGCTGGCGAAGAAGTGGAAAAAGGTGAAGGTGATGCCTTGGACGAGAGTGAAGAGGAGAACAGCTCTGATACAGAAGAGTTGGAGGGCACCACCAAGGGTGAGAAGCTGCAATCAGAACTTCAAAGCTTGAATTCAAAGGCCACGCAAGTACAGTTGGAACTGAAGGGAACGGGAAATTCAAGTTCTAAGAAGACATCGGGTGGTAGAGGTAAAGGTGTTTCTGTATCTGGGAAGAAGGTTGCTCAAGCTCCAAAGACTACTGCAAAAAGAAAAAGGTGA 3417 0.4287 MRYVAVQLYAAHNSDAGRMGYFLVQVVLFRRKPYVIISVVALEKAGTSEILAILPGYPDNVRVNEEGDFWVALHCRRYMFAYYNGIYPEIRKIILKLPIPIKIQYLIQIGGHQHAAVIRYSPEGRLLQILEDSEGKVVKAVSEVEEKDGKLWMGSVLMPFVARGSQHNTLVQLVGAKFSLFSRLNLNAQMSDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQKGKDKKEMQELPAKRKNMKDSEEIPEPKKIHEDDGDDSVLPTNKKKLADTTPTKKLKSGSGRGLPQKSAVLEESDEDDDKDAVSAAKSAGRGDGGRGAPGRSTSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKQLGTSFLTEDGLFDMIRGSKPAKAPSQEDKKPVNKAVAVASQSKVSPKSQVKVPLSSRSPSNQAKPKTATTVQSSLMWTEKYRPKDPKDIIGNQSLVLQLRNWLKAWNEHFLDTGNKKQGKKQNDSGLKKAVLLSGTPGIGKTTSATLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNEAIGINMGRSKHYKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMSLSMSIINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLIIQENYINYRPSMAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVATSIIPASLLHGQREILEQGERNFNRFGGWLGKNSTMGKNLRLLDDLHVHILASRESSSGRDTIRMEYLTLLLKQMTETLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKEYKEQSTSRVVRVADLITLPGVKKVPKKRIAAILEPAGEEVEKGEGDALDESEEENSSDTEELEGTTKGEKLQSELQSLNSKATQVQLELKGTGNSSSKKTSGGRGKGVSVSGKKVAQAPKTTAKRKR 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00855 1138 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 199 1110 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 1080 1115 - -
Gma12g00855 1138 Pfam BRCA1 C Terminus (BRCT) domain 387 462 IPR001357 -
Gma12g00855 1138 SMART AAA_5 574 712 IPR003593 -
Gma12g00855 1138 CDD HLD_clamp_RFC 711 769 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 1046 1138 - -
Gma12g00855 1138 PANTHER REPLICATION FACTOR C SUBUNIT 1 199 1110 - -
Gma12g00855 1138 Gene3D - 711 781 - -
Gma12g00855 1138 SMART BRCT_7 387 465 IPR001357 -
Gma12g00855 1138 SUPERFAMILY BRCT domain 385 464 IPR036420 -
Gma12g00855 1138 Gene3D - 522 710 IPR027417 -
Gma12g00855 1138 CDD BRCT_RFC1 385 463 - -
Gma12g00855 1138 Pfam ATPase family associated with various cellular activities (AAA) 578 677 IPR003959 GO:0005524|GO:0016887
Gma12g00855 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 771 IPR027417 -
Gma12g00855 1138 Coils Coil 1079 1099 - -
Gma12g00855 1138 ProSiteProfiles BRCT domain profile. 385 463 IPR001357 -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 203 247 - -
Gma12g00855 1138 SUPERFAMILY Calcium-dependent phosphotriesterase 38 159 - -
Gma12g00855 1138 CDD AAA 575 674 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 1054 1070 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 485 516 - -
Gma12g00855 1138 Gene3D - 783 892 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 248 302 - -
Gma12g00855 1138 Pfam Replication factor RFC1 C terminal domain 851 1013 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Gma12g00855 1138 Gene3D BRCT domain 362 464 IPR036420 -
Gma12g00855 1138 SUPERFAMILY post-AAA+ oligomerization domain-like 782 927 IPR008921 GO:0003677|GO:0006260
Gma12g00855 1138 Gene3D - 39 175 IPR011042 -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 202 387 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 369 384 - -
Gma12g00855 1138 MobiDBLite consensus disorder prediction 463 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00855 Gma-Chr12 8237041 8249807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00855 190 1096 Core DNA Replication Machinery Family AT5G22010 67.283 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00855 K10754 - gmx:100790070 1687.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00855 12 8237041 8249807 Gma06g02740 06 51184933 51195506 GST