Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00854 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCCAATTTGTTATCAGTTAACATGGGAGCTTCACTTCAAGCATTTCCCCCTCAAGACCCTCAGAAACAGCACCTAAGCTTTCAAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAGCAAAATAGCGCCATTTGAGGCAGTAGAGCATGAACTACCTAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTTCCTTCTGCTTATAATCGCTTCATTAAGGAGGAAATTCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGAACTTAAAGCTGGATGGCAACAAGCAAGAAAAGTTGGACCAGGGGGAAGGAGCTGAAAAGTCTAACGGATTCTACTGA 552 0.4402 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQKQHLSFQEPSSKELGSSSKCSKIAPFEAVEHELPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKNLKLDGNKQEKLDQGEGAEKSNGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00854 183 MobiDBLite consensus disorder prediction 58 82 - -
Gma12g00854 183 Pfam YABBY protein 7 157 IPR006780 GO:0007275
Gma12g00854 183 PANTHER PLANT-SPECIFIC TRANSCRIPTION FACTOR YABBY FAMILY PROTEIN 1 183 - -
Gma12g00854 183 SUPERFAMILY HMG-box 102 150 IPR036910 -
Gma12g00854 183 PANTHER PROTEIN YABBY 6-RELATED 1 183 IPR006780 GO:0007275
Gma12g00854 183 Gene3D High mobility group box domain 101 153 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00854 Gma-Chr12 8217381 8226034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00854 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 64.211 1.74e-78 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gma12g00854 YABBY 4.5e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00854 K25796 - gmx:100500091 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00854 12 8217381 8226034 Gma06g02742 06 51209221 51216754 GST
Gma13g02757 13 42147499 42157253 Gma12g00854 12 8217381 8226034 PCT
Gma12g01801 12 38617403 38627170 Gma12g00854 12 8217381 8226034 PCT
Gma12g00854 12 8217381 8226034 Gma13g02757 13 42147499 42157253 PCT
Gma12g00854 12 8217381 8226034 Gma12g01801 12 38617403 38627170 PCT