Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00852 ATGTTTGGGAGGGCACCGAAGAAGAGCGATAATACGAGGTACTACGAAATCCTCGGCGTCTCCAAGAACGCTTCGCAGGATGATCTGAAGAAGGCTTACAAGAAAGCCGCCATTAAGAATCACCCCGACAAGGGCGGTGATCCCGAGAAGTTTAAAGAGCTGGCGCAAGCTTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCGCTTAAGGAAGGAATGGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTTTCATCTTTCTTTGGCGGTGGGAGTCCCTTTGGATCAGGTGGAAGTAGTCGAGGTAGGAGGCAGAGGCGCGGAGAAGACGTGGTTCACCCTCTCAAGGTCTCTTTGGAGGACCTTTATCTTGGAACTTCCAAGAAGCTCTCCCTCTCCAGAAATGTTATATGCTCCAAGTGCAGTGGCAAGGGTTCTAAGTCTGGTGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACATCTTGGCCCATCCATGATTCAGCAGATGCAGCATGCCTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGACAGAGATCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTGCAGGAGAAGAAAGTCCTTGAAGTTATTGTAGAAAAGGGGATGCAGAATGGGCAGAAGATAACATTCCCTGGCGAAGCTGATGAAGCGCCGGACACAATTACTGGGGATATCGTCTTTGTCCTTCAGCAGAAGGAACATCCCAAATTCAAAAGAAAGGCTGAAGATCTTTTTGTAGAGCACACTTTGTCCCTTACCGAGGCCTTGTGTGGCTTCCAATTTGTGCTGACTCACTTGGATAGCCGTCAGCTTCTTATTAAATCAAATCCCGGGGAAGTTGTGAAGCCTGATTCATACAAGGCTATAAATGATGAGGGAATGCCCATGTATCAGAGGCCATTCATGAAGGGGAAACTTTACATTCACTTCACTGTGGAGTTTCCAGATTCTCTAAACCCTGATCAAGTTAAGGCCTTGGAGGCTGTTCTGCCACCAAAGCCTTCTTCACAATTGACAGACATGGAGCTGGATGAATGTGAGGAAACTACACTCCATGATGTCAACATGGAGGAGGAGACTAGGAGGAAGCAGCAACAAGCTCAGGAGGCATATGATGAGGATGATGACATGCCTGGTGGTGCACAGAGGGTACAGTGCGCCCAGCAGTAA 1254 0.4801 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGHDPFDIFSSFFGGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHACNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFKRKAEDLFVEHTLSLTEALCGFQFVLTHLDSRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQAQEAYDEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00852 417 Gene3D - 109 260 - -
Gma12g00852 417 SMART dnaj_3 12 66 IPR001623 -
Gma12g00852 417 CDD DnaJ 14 63 IPR001623 -
Gma12g00852 417 MobiDBLite consensus disorder prediction 376 398 - -
Gma12g00852 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gma12g00852 417 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 417 - -
Gma12g00852 417 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Gma12g00852 417 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Gma12g00852 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gma12g00852 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gma12g00852 417 Gene3D - 148 214 - -
Gma12g00852 417 Gene3D - 262 344 - -
Gma12g00852 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Gma12g00852 417 Gene3D DnaJ domain 10 108 IPR036869 -
Gma12g00852 417 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Gma12g00852 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 417 IPR044713 GO:0006457|GO:0030544
Gma12g00852 417 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Gma12g00852 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 114 271 IPR008971 GO:0006457|GO:0051082
Gma12g00852 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Gma12g00852 417 CDD DnaJ_C 119 346 - -
Gma12g00852 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gma12g00852 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gma12g00852 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gma12g00852 417 MobiDBLite consensus disorder prediction 361 417 - -
Gma12g00852 417 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Gma12g00852 417 Pfam DnaJ domain 14 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00852 Gma-Chr12 8169463 8172610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00852 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.05e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00852 K09503 - gmx:547558 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00852 12 8169463 8172610 Gma12g00852 12 8169463 8172610 ECH
Gma11g01425 11 14691001 14693350 Gma12g00852 12 8169463 8172610 ECH
Gma12g00852 12 8169463 8172610 Gma11g01425 11 14691001 14693350 GST
Gma13g02760 13 42182889 42185255 Gma12g00852 12 8169463 8172610 PCT
Gma12g01797 12 38580016 38582486 Gma12g00852 12 8169463 8172610 PCT
Gma12g00852 12 8169463 8172610 Gma13g02760 13 42182889 42185255 PCT
Gma12g00852 12 8169463 8172610 Gma12g01797 12 38580016 38582486 PCT