Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00846 ATGGATGAAATAGAGGTTCCTACCCTTTTCCTCTGCCCAATTTCTTTGGAGCTTATGAGTGACCCTGTCACAGTGTGCACAGGAATCACATACGACAGAGAAAACATAGAGAGATGGTTATTTTCATCATGCAAGAAGAACAAAACCTGCCCTGTCACTAGGCAATCACTTCCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCACCAACAACAATAATGCCTGGCTTGGCATTGAAACCATAATTTCATCTCCAAAGCCAACCATTGACCAAACTCAAATTGTGAAACTCCTCATGGAAGCAAAGAAGTTCCCTGAAAAACAGCTCAAGTGTCTTAGAAGGCTTCAATCCATTGCCTTTGAAAGTGAAAGCAACAAAATCTATTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCAAGTGTTATGAGTGAAGCAGCTATAGAACTCTTGTTTCATCTAAACCCTTCTGAATCTCACCTAAAAAATTTGGTGAACAGTGAGGGGATTCAATTTATTGAGTCTTTGTTTCATGTCTTGAAGCATGGAAAGTGCCAATCTAGAGCTTATGCAACTGTGCTATTGAAGTCATCATTTGAAGTGGCTGGTCCAACCCAATTGAGCAATGTCACATCAGAGATGTTTGTGGAAATGTTTAGAGTGTTGAGGGATCAAATTTCACAAGAAGCTTCTAAGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGAGCAGGAACAGGATCAAAGCAGTTGAGGGTGGTGGTGTTCTAGCCCTCATTGAGCTACTTCTTGATGTGTCAGAAAGGAGAACATGTGAACTCCTGTTGATTGCTTTGGACAGACTTTGTGGCTGTGCAGAAGGAAGAGAAGAATTGATGAACCATGGAGCTGGAGTGGCTGTTGTGGCCAAGAAAATTCTGAGGGTTTCTCATGTGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACGCCTAGAGTCCTTAGTGAAATGCTGCTATTTGGGGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAATGGAGGGTAGTTGCAACGCCAAGGAGAGGGCAAGGGAGACACTCAAATTGCACTCTATGGTTTGGAGGAACTCCACGTGTATTCCTTTCTCTTTGCTTGCATCCTATCCATGA 1194 0.4322 MDEIEVPTLFLCPISLELMSDPVTVCTGITYDRENIERWLFSSCKKNKTCPVTRQSLPHTDLTPNHTLQRLIQAWCTNNNNAWLGIETIISSPKPTIDQTQIVKLLMEAKKFPEKQLKCLRRLQSIAFESESNKIYLESAGAIDFLASSVMSEAAIELLFHLNPSESHLKNLVNSEGIQFIESLFHVLKHGKCQSRAYATVLLKSSFEVAGPTQLSNVTSEMFVEMFRVLRDQISQEASKAALKLLVELCSWSRNRIKAVEGGGVLALIELLLDVSERRTCELLLIALDRLCGCAEGREELMNHGAGVAVVAKKILRVSHVASDRGVKILTSICRHSATPRVLSEMLLFGAVSKLCLVLQMEGSCNAKERARETLKLHSMVWRNSTCIPFSLLASYP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00846 397 CDD RING-Ubox_PUB 10 55 IPR045210 -
Gma12g00846 397 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gma12g00846 397 PANTHER WDSAM1 PROTEIN 1 397 IPR045185 GO:0061630
Gma12g00846 397 SUPERFAMILY RING/U-box 3 84 - -
Gma12g00846 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Gma12g00846 397 SUPERFAMILY ARM repeat 112 375 IPR016024 -
Gma12g00846 397 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Gma12g00846 397 Gene3D - 99 385 IPR011989 -
Gma12g00846 397 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gma12g00846 397 PANTHER OS11G0573500 PROTEIN 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00846 Gma-Chr12 8067830 8069023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00846 2 397 U-box Gene Family AT2G35930 50.000 5.30e-134 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00846 - - var:108340160 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00846 12 8067830 8069023 Gma12g00846 12 8067830 8069023 ECH
Gma13g02772 13 42278833 42280479 Gma12g00846 12 8067830 8069023 PCT
Gma12g01786 12 38481418 38483127 Gma12g00846 12 8067830 8069023 PCT
Gma12g00846 12 8067830 8069023 Gma13g02772 13 42278833 42280479 PCT
Gma12g00846 12 8067830 8069023 Gma12g01786 12 38481418 38483127 PCT