LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00846	ATGGATGAAATAGAGGTTCCTACCCTTTTCCTCTGCCCAATTTCTTTGGAGCTTATGAGTGACCCTGTCACAGTGTGCACAGGAATCACATACGACAGAGAAAACATAGAGAGATGGTTATTTTCATCATGCAAGAAGAACAAAACCTGCCCTGTCACTAGGCAATCACTTCCACACACAGATCTTACTCCAAACCACACTCTCCAACGTTTGATCCAAGCTTGGTGCACCAACAACAATAATGCCTGGCTTGGCATTGAAACCATAATTTCATCTCCAAAGCCAACCATTGACCAAACTCAAATTGTGAAACTCCTCATGGAAGCAAAGAAGTTCCCTGAAAAACAGCTCAAGTGTCTTAGAAGGCTTCAATCCATTGCCTTTGAAAGTGAAAGCAACAAAATCTATTTGGAGTCTGCAGGGGCAATAGATTTCTTGGCTTCAAGTGTTATGAGTGAAGCAGCTATAGAACTCTTGTTTCATCTAAACCCTTCTGAATCTCACCTAAAAAATTTGGTGAACAGTGAGGGGATTCAATTTATTGAGTCTTTGTTTCATGTCTTGAAGCATGGAAAGTGCCAATCTAGAGCTTATGCAACTGTGCTATTGAAGTCATCATTTGAAGTGGCTGGTCCAACCCAATTGAGCAATGTCACATCAGAGATGTTTGTGGAAATGTTTAGAGTGTTGAGGGATCAAATTTCACAAGAAGCTTCTAAGGCAGCATTGAAGCTTCTTGTGGAGTTGTGTTCATGGAGCAGGAACAGGATCAAAGCAGTTGAGGGTGGTGGTGTTCTAGCCCTCATTGAGCTACTTCTTGATGTGTCAGAAAGGAGAACATGTGAACTCCTGTTGATTGCTTTGGACAGACTTTGTGGCTGTGCAGAAGGAAGAGAAGAATTGATGAACCATGGAGCTGGAGTGGCTGTTGTGGCCAAGAAAATTCTGAGGGTTTCTCATGTGGCAAGTGATAGAGGGGTCAAAATTTTGACCTCCATTTGTAGGCATTCAGCCACGCCTAGAGTCCTTAGTGAAATGCTGCTATTTGGGGCTGTGTCTAAGTTGTGTTTGGTGCTTCAAATGGAGGGTAGTTGCAACGCCAAGGAGAGGGCAAGGGAGACACTCAAATTGCACTCTATGGTTTGGAGGAACTCCACGTGTATTCCTTTCTCTTTGCTTGCATCCTATCCATGA	1194	0.4322	MDEIEVPTLFLCPISLELMSDPVTVCTGITYDRENIERWLFSSCKKNKTCPVTRQSLPHTDLTPNHTLQRLIQAWCTNNNNAWLGIETIISSPKPTIDQTQIVKLLMEAKKFPEKQLKCLRRLQSIAFESESNKIYLESAGAIDFLASSVMSEAAIELLFHLNPSESHLKNLVNSEGIQFIESLFHVLKHGKCQSRAYATVLLKSSFEVAGPTQLSNVTSEMFVEMFRVLRDQISQEASKAALKLLVELCSWSRNRIKAVEGGGVLALIELLLDVSERRTCELLLIALDRLCGCAEGREELMNHGAGVAVVAKKILRVSHVASDRGVKILTSICRHSATPRVLSEMLLFGAVSKLCLVLQMEGSCNAKERARETLKLHSMVWRNSTCIPFSLLASYP	397

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma12g00846	397	CDD	RING-Ubox_PUB	10	55	IPR045210	-
Gma12g00846	397	SMART	Ubox_2	9	75	IPR003613	GO:0004842\|GO:0016567
Gma12g00846	397	PANTHER	WDSAM1 PROTEIN	1	397	IPR045185	GO:0061630
Gma12g00846	397	SUPERFAMILY	RING/U-box	3	84	-	-
Gma12g00846	397	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	84	IPR013083	-
Gma12g00846	397	SUPERFAMILY	ARM repeat	112	375	IPR016024	-
Gma12g00846	397	Pfam	U-box domain	6	80	IPR003613	GO:0004842\|GO:0016567
Gma12g00846	397	Gene3D	-	99	385	IPR011989	-
Gma12g00846	397	ProSiteProfiles	U-box domain profile.	5	82	IPR003613	GO:0004842\|GO:0016567
Gma12g00846	397	PANTHER	OS11G0573500 PROTEIN	1	397	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00846	Gma-Chr12	8067830	8069023	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g00846	2	397	U-box Gene Family	AT2G35930	50.000	5.30e-134	388

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00846	-		-	var:108340160	621.698

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma12g00846	12	8067830	8069023	Gma12g00846	12	8067830	8069023	ECH
Gma13g02772	13	42278833	42280479	Gma12g00846	12	8067830	8069023	PCT
Gma12g01786	12	38481418	38483127	Gma12g00846	12	8067830	8069023	PCT
Gma12g00846	12	8067830	8069023	Gma13g02772	13	42278833	42280479	PCT
Gma12g00846	12	8067830	8069023	Gma12g01786	12	38481418	38483127	PCT

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