Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00845 ATGGAAGAAGTTGAAATCCCACAATATTTTGTTTGTCCCATTTCGTTTCAGATCATGGAGGACCCTGTGACTACTGTGACAGGCATAACATATGATAGAGAAAGCATAGAGCAGTGGTTGCTTAAGGCCAAAGATTGTGTGTGTCCTGTTTCCAAGCAACCATTGCCAAGAAGCTCTCAATACTTGACCCCTAATCACACACTTCGGAGGCTGATTCAAGCTTGGTGTTCAGCAAACACGGCCAATGGTGTTGATCGAATTCCGACCCCGAAAACGCCTTTGAGCATGATCCAAGTTCAGAAGCTTGTGAAGGGTCTTGAGGCTCCTTGTTCTTATCAAACATCGTTGGAGAAGTTGCATGCCTTGGCTACAATTGAGAGGAACAGAACTTGCATGGCTGAGGCTAGTGTGGCTAAGGCCATGATCAAATTGATTAACAAGAGTTTCAAAGAAGGAAACACAAACACCACCTGCATAGAAAAGGCTTTGAGAATTGTTCATGTTCTTTGGAGCAATGATCAATATAGCATGAAGACTCTAGTTGGGGAGGACTTAGACTTCATCAACTCTTTGACTTGGATTGTGAGGCTTCATTTGGATGAAAACAACATCAAGATGGTAAACGAAGCAATGCCCCTTTTGAAGTTGACAATTGAAGTTGTTGATTCAACCCTTTTGGGGAATTTAAGCCTTGAATTCTTCAAGGAAATGGTGAGAGTTTTGAGAAAGAAAAGACTCTCTCAACAAGCCATTAAATATGCTTTGTGGGTGCTTACAGAAACTAGCACTTTGGGTAGAAACAGAACAAGGATTGTTGAAGCAGGTGCAGTCACAGAACTCATAGAGCTTGAGCTTGAGAAACCAGAGAAGAACATGACAGAGCTCATATTCAATCTTCTGGCACTCCTGTGTTCTTGTGCTGATGGAAGAGAACAGTTTCTGCGACACGCTGCCGGCATTGCAGTGCTTTCTAAGAGGGTTTTCAGGGTTTCTGCTGCCACTGATGACAGAGCAATTCATGTGTTTTCAGTGATTGCCAAGTTTTCAGCATCAAATGAGGTTGTTCTAGAGATGTTGAGGGTTGGAGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCCTGCATACAAAATGTGTTATAA 1215 0.4247 MEEVEIPQYFVCPISFQIMEDPVTTVTGITYDRESIEQWLLKAKDCVCPVSKQPLPRSSQYLTPNHTLRRLIQAWCSANTANGVDRIPTPKTPLSMIQVQKLVKGLEAPCSYQTSLEKLHALATIERNRTCMAEASVAKAMIKLINKSFKEGNTNTTCIEKALRIVHVLWSNDQYSMKTLVGEDLDFINSLTWIVRLHLDENNIKMVNEAMPLLKLTIEVVDSTLLGNLSLEFFKEMVRVLRKKRLSQQAIKYALWVLTETSTLGRNRTRIVEAGAVTELIELELEKPEKNMTELIFNLLALLCSCADGREQFLRHAAGIAVLSKRVFRVSAATDDRAIHVFSVIAKFSASNEVVLEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSKVWNNSPCIQNVL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00845 404 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Gma12g00845 404 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Gma12g00845 404 Gene3D - 101 403 IPR011989 -
Gma12g00845 404 SUPERFAMILY ARM repeat 233 388 IPR016024 -
Gma12g00845 404 SUPERFAMILY RING/U-box 3 84 - -
Gma12g00845 404 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 402 - -
Gma12g00845 404 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Gma12g00845 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Gma12g00845 404 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00845 Gma-Chr12 8051933 8053147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00845 2 401 U-box Gene Family AT3G11840 41.216 4.46e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00845 - - gmx:100787426 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00845 12 8051933 8053147 Gma12g00845 12 8051933 8053147 ECH
Gma12g00845 12 8051933 8053147 Gma11g01452 11 15115263 15116894 GST
Gma13g02773 13 42287648 42289201 Gma12g00845 12 8051933 8053147 PCT
Gma12g01785 12 38478004 38479601 Gma12g00845 12 8051933 8053147 PCT
Gma12g00845 12 8051933 8053147 Gma13g02773 13 42287648 42289201 PCT
Gma12g00845 12 8051933 8053147 Gma12g01785 12 38478004 38479601 PCT