Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00843 ATGGCGACGTACTTTCATGGCAGCACTTCAGAAATCCCTTCCTCCGCTGAAGGGTTGCAGACACTTTACCTTATGAATCCAAACTACGTACCGTACTCTGACGCGGCACAACACCCAACGCAAAACATGCTCCTCGTCAATCCCAACAACAACAACACTAGTAACACTAGTCCCACTTCCACCAACGCGCTCAACCTTGGTAACTTCTCCCACGCGCCGCCACCTCCTTCTCCCAACAACAACAACAACCACCGTGAACAACAACAACATCACCTGATTGGGGTTACCATTCCCTCTTCAAACATCCTTGGATCCAACGCTGCCGCCACCGACCCCGCTCGATCATCGTTCCTCGGACAACACGAATTCTCCAGCTTCCACGGTGGTGCTGCCGCCACCTCAACGGTGACAGCATCTCGTGGTAACTATAACTTATGGGGTTCCATAATTGATCAATCTGCGTTGAATATCATGGCAGCAACGACACACACCCCATCTAGTAACATGGGGTGTGTTGCCAGCAGTGTCATGTCGACGCAGATTGGATTCCACAGGCCTAATCATTTGTCACTGAGCCTATCTTCACAACAAACACCATATAGGTCTCTCTCTGGGGAGATTCATGCTATTTCTCCGGCGAGCCGTGGCGGTGGCGGCGATGATATGAGGGGCTTGCACAACGGGGTTTCTAGTATGCATAGTGTTGCTTTGGGTTCCAAGTATTTGAAAGCAACACAGGAGCTTCTTGATGAAGTTGTGAATGTGGGCAAGGGAATCTCCAAAGGGGAGGAATCTATGGAAGGGGCTAAGAAGGAGAAGATGAAAGGGAATATTGAATCCACTTCTGGGGTTGGCGATGGTTCGAGCTGCGGAAGGGAGAATAATGATCGAGCCAAACAAGGAGTTGAACTCAGCACAGCACAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTGACCATGCTCGATGAGGTGGAGCAAAGGTACAGACAGTATCACCACCAAATGCAAGTTGTGCTAACATCGTTTGAGCAAGCAGCGGGTGTTGGTGCGGCAAAGTCTTACACGGCCCTTGCCTTGAAGACAATCTCAAAGCAATTTCGGTGTCTCAAAGATGCAATCTCTTCACAAATCAAGACAACTAGCAAGACCTTAGGTGAAGATAATTGCCTGGGAGTTAAGGTAGAGGGTTCGAGGCTAAGGTATGTTGATCATCAACAGAGACAACAACGTGCATTACAGCTTGGAATGATCCAACACAACGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGTGCTGTCTCTGTCCTTCGTGCTTGGCTTTTTGAACATTTCTTGCACCCCTATCCTAAGGACTCCGATAAGGTTATGCTTGCAAAACAAACTGGGCTTACTCGGAGCCAGGTATCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAGCCAATGGTAGAAGAAATGTACTTGGAAGAGGTAAAACAAGAGCCAAACAATAGCTCCCAGGATAACAACAACACAAAAGGATCAAATGAATCAAGCAAGGAGTTATGGTCAGAAGCTAATGCTGCTGCACAAGAATCAGGTGCAATGAGATTTGATCAGATTAACATTCTCCAATCAAAGGCAGAAAGCTTCAAGAACAACCAAACCACTTCCCCAACAGAGATCTCCAATTCCAACTCACTCCAATCTGGTTTCCATCTTGCTGACATGCAAAGTCCAAACAAGCCAAAAAGCACTTCTGAGATGCATCAGAATTCTCCAGGTAGCATTCTTTCAGTGGACATGGAAATGAAGCCTCATCATCATGGAGAAACAAATAATATCACTAGAGAAGGCCAGAACAACAACACAACAACAAAGTTTGGCATTGAAAGCCATGGTGGGGGTTTTGGAGCATTTCCCAATATGGAAGACATTGGAAGGTTTCATCATCATGTCACAGAGCAACTTGCTCCTAGGTTCCATGGAAATGGTGTTTCTCTCACTCTTGGACTTCCACACAGTACTGAGAATAACCTTTCCCTCTCAGGAACAACCCAACATGGATTCCTCTCACAGAACATGCACTTGGGAATGAGAAACAGTGAAAATGATGAGTTTTGTGGTGCAATCAACACTACCCCACCTTCTTCTCACTCAGGTATCAGTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGCTGCGCAGTTGTTGCGGGATTTCGTGGCTTAA 2226 0.4672 MATYFHGSTSEIPSSAEGLQTLYLMNPNYVPYSDAAQHPTQNMLLVNPNNNNTSNTSPTSTNALNLGNFSHAPPPPSPNNNNNHREQQQHHLIGVTIPSSNILGSNAAATDPARSSFLGQHEFSSFHGGAAATSTVTASRGNYNLWGSIIDQSALNIMAATTHTPSSNMGCVASSVMSTQIGFHRPNHLSLSLSSQQTPYRSLSGEIHAISPASRGGGGDDMRGLHNGVSSMHSVALGSKYLKATQELLDEVVNVGKGISKGEESMEGAKKEKMKGNIESTSGVGDGSSCGRENNDRAKQGVELSTAQRQELQMKKSKLVTMLDEVEQRYRQYHHQMQVVLTSFEQAAGVGAAKSYTALALKTISKQFRCLKDAISSQIKTTSKTLGEDNCLGVKVEGSRLRYVDHQQRQQRALQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEVKQEPNNSSQDNNNTKGSNESSKELWSEANAAAQESGAMRFDQINILQSKAESFKNNQTTSPTEISNSNSLQSGFHLADMQSPNKPKSTSEMHQNSPGSILSVDMEMKPHHHGETNNITREGQNNNTTTKFGIESHGGGFGAFPNMEDIGRFHHHVTEQLAPRFHGNGVSLTLGLPHSTENNLSLSGTTQHGFLSQNMHLGMRNSENDEFCGAINTTPPSSHSGISYESIDIQNRKRFAAQLLRDFVA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00843 741 MobiDBLite consensus disorder prediction 43 68 - -
Gma12g00843 741 SUPERFAMILY Homeodomain-like 425 490 IPR009057 -
Gma12g00843 741 MobiDBLite consensus disorder prediction 495 522 - -
Gma12g00843 741 MobiDBLite consensus disorder prediction 568 589 - -
Gma12g00843 741 Pfam Associated with HOX 237 376 IPR006563 -
Gma12g00843 741 SMART HOX_1 424 488 IPR001356 GO:0003677
Gma12g00843 741 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 698 - -
Gma12g00843 741 MobiDBLite consensus disorder prediction 494 526 - -
Gma12g00843 741 Pfam Homeobox KN domain 441 480 IPR008422 GO:0003677|GO:0006355
Gma12g00843 741 ProSiteProfiles 'Homeobox' domain profile. 421 484 IPR001356 GO:0003677
Gma12g00843 741 Coils Coil 309 329 - -
Gma12g00843 741 Gene3D - 427 506 - -
Gma12g00843 741 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 698 - -
Gma12g00843 741 MobiDBLite consensus disorder prediction 264 295 - -
Gma12g00843 741 MobiDBLite consensus disorder prediction 43 85 - -
Gma12g00843 741 CDD homeodomain 424 485 IPR001356 GO:0003677
Gma12g00843 741 SMART prehox3 230 377 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00843 Gma-Chr12 8010269 8014529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00843 1 741 Homeobox Transcription Factor Family AT2G35940 41.730 2.27e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma12g00843 POX 3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00843 - - gmx:100786883 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00843 12 8010269 8014529 Gma12g00843 12 8010269 8014529 ECH
Gma12g00843 12 8010269 8014529 Gma11g01455 11 15160717 15164938 GST
Gma13g02774 13 42293472 42298555 Gma12g00843 12 8010269 8014529 PCT
Gma12g01784 12 38456213 38460047 Gma12g00843 12 8010269 8014529 PCT
Gma12g00843 12 8010269 8014529 Gma13g02774 13 42293472 42298555 PCT
Gma12g00843 12 8010269 8014529 Gma12g01784 12 38456213 38460047 PCT