Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00840 ATGATGGGTATGATGAAAGTTAGCATCTTTGTGTTTTTAACCCTGATGATCACAATGGGTTGTTATGGTGTCACTAACCCGAATGATCTCAGAATTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCAGACAATGGAAATGACCCTTGTGGCCCTCCTTCATGGTCTTATGTGTACTGTTCTGGAGGGAGAGTCACTCAGATTCAGACCAAGAATCTAGGTCTTGAAGGATCATTGCCTCCAAACTTTAACCAGCTCTACGAGCTTCAGAATTTGGGTCTTCAACGCAATAACCTTAGTGGAAGATTGCCTACTTTCAGTGGATTGTCCAAATTGCAATATGCTTTCTTGGATTACAATGAGTTTGATTCAATCCCATCTGATTTCTTCAATGGACTCAACAGCATCAAGGTTTTGTCTTTGGAGGTAAACCCTTTGAATGCTACCACAGGGTGGTATTTTCCCAAGGACTTGGAAAATTCAGTGCAGTTGATCAATCTTTCTCTGGTGAATTGTAATTTGGTTGGAACATTGCCTGATTTCCTAGGCACATTACCCTCTCTCACAAATCTGAGGCTTTCAGGCAACAGATTGACTGGTGCAATTCCAGCTAGTTTTAATCGGTCTTCAATCCAGGTTTTGTGGTTAAATGATCAAGAAGGAGGAGGGATGACAGGTCCTATTGATGTCGTCGCTTCCATGACTTTCCTCAGACAGGTTTGGCTTCACGGAAACCAGTTCAGTGGGACAATTCCACAGAACATTGGAAATCTAACTTCCTTGCAGGAGCTCAACCTCAATAGCAATCAACTTGTTGGTTTGATTCCAGATTCCTTGGCAAATATGGACCTTCAGATACTGGTGTTAAATAATAACGGGTTCATGGGTCCAATACCAAAGTTTAAGGCTGACAAAGTATCTTATGATTCTAATTTATTTTGTCAGTCCAAGCCTGGGCTTGAATGTGCCCCTCAAGTTACTGCACTGCTGGATTTTCTCAATAATCTGAATTACCCTTCAGGTCTTGCTTCTAAATGGTCAGGTAATGATCCGTGTGGAGAATCGTGGTTCGGATTGAGCTGCGATCAGAATTCAAAGGTATCTATAATCAATTTGCCAAGACAACAGCTGAATGGTACACTGAGTTCGTCACTAGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCTGAAAATAATATTACCGGCAAAGTTCCTAGTAAATTTACTGAATTGAAATCTTTGAGGTTGTTGGATTTAAGAGATAACAATGTTGAGCCACCACTGCCAAACTTTCATAGTGGTGTGAAGGTTATTATTGAGGGTAACCCTCGTCTTGGTAATCAACCTGTAAGTAGTCCCAGTCCCACGCCTTTTACAAGCAGGCCACCTTCAAGTGCACAGCCTTCACCCCACGACCCGTCGCGGTCACCATCCCCACCATACTCCCATATGCAACCTTCTCCAAGGCAGAGTCCAAGCTCGAATTCGAATCAGTCTAGTTCTGTCCGGTTAAAACCCCACCGAAATGGCTTCAAAAGATTCAAAACAGTAGCTATAGTAGCTGGAGCTGCAATCTTTGCATTTGTAGCTCTTTTGGTTACTTCTCTCTTAATATGTTGCTTGAAGAAGGAAAAAGCCTCCAAAGTTGTGGTTCACACTAAAGATCCATCTTATCCAGAAAAGATGATTAAATTTGCAGTTATGGATAGCACCACCGGAAGCTTATCAACAAAGACAGGGATAAGTTCTCTGACCAACATTAGTGGTGAAACTGAAAGCTCTCATGTAATTGAGGATAGAAACATTGCCATCTCCATTCAAGATCTACGCAAGGTCACCAATAACTTTGCTTCAGAAAATGAGCTAGGCCATGGTGGGTTTGGAACTGTTTACAAGGGTGAGCTAGAAAATGGTAAAAAAATAGCAGTGAAGAGAATGGAATGTGGAGCTGTTAGCAGTAGAGCACTGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATTTGGTATCCCTACTAGGCTATTCCATTGAAGGAAATGAAAGAATTTTGGTTTATGAATATATGCCTATGGGTGCTCTAAGCAGGCATCTTTTTCATTGGAAAAACTTGAAATTGGAGCCATTGTCGCTGTCTCAGAGGCTTACAATAGCCCTTGATGTTGCTAGAGCGATGGAATACCTTCATGGTCTTGCACGCCAAACCTTCATCCATCGCGACCTCAAGTCTTCTAATATTCTACTGGGGGATGATTTTCACGCAAAAGTTTCTGATTTTGGCCTGGTGAAACTTGCCCCGGATGGCCAGAAGTCTGTGGCAACAAAGCTTGCAGGAACATTTGGTTATCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGACGTTTTCAGCTACGGTGTGGTCTTGATGGAACTTCTGACTGGACTAATGGCTCTTGACGAGAGCCGGTCGGAGGAAAGTCGATACCTAGCTGAATGGTTTTGGCAAATTAAATCCAGCAAAGAAACACTTATGGCAGCCATTGACCCAGCTCTTGAAGCAAGTGAAGAGGCTTTTGAGAGCATTTCTATTGTGGCTGAACTCGCTGGACACTGCACTTCCAGGGATGCAAGTCACAGGCCTGATATGAGTCATGCAGTCAGTGTGCTATCCGCATTAGTGGAGAAATGGCGACCTGTTGATGAAGAATTTGATTATGGCTCTGGCATTGACTTCAGTCAACCACTTCCTCAGTTGCTGAAAGATTGGAAGGAATCAGAAGGCAAAGAATCAAGCTATACAAGTGCACACAGTGAAGGAAGCATACCAGCTAGGCCTACTGGTTTTGCAGACTCTTTTACCTCTGCTGATGCAAGATGA 2907 0.43 MMGMMKVSIFVFLTLMITMGCYGVTNPNDLRILNDFRKGLKNPELLKWPDNGNDPCGPPSWSYVYCSGGRVTQIQTKNLGLEGSLPPNFNQLYELQNLGLQRNNLSGRLPTFSGLSKLQYAFLDYNEFDSIPSDFFNGLNSIKVLSLEVNPLNATTGWYFPKDLENSVQLINLSLVNCNLVGTLPDFLGTLPSLTNLRLSGNRLTGAIPASFNRSSIQVLWLNDQEGGGMTGPIDVVASMTFLRQVWLHGNQFSGTIPQNIGNLTSLQELNLNSNQLVGLIPDSLANMDLQILVLNNNGFMGPIPKFKADKVSYDSNLFCQSKPGLECAPQVTALLDFLNNLNYPSGLASKWSGNDPCGESWFGLSCDQNSKVSIINLPRQQLNGTLSSSLAKLDSLLEIRLAENNITGKVPSKFTELKSLRLLDLRDNNVEPPLPNFHSGVKVIIEGNPRLGNQPVSSPSPTPFTSRPPSSAQPSPHDPSRSPSPPYSHMQPSPRQSPSSNSNQSSSVRLKPHRNGFKRFKTVAIVAGAAIFAFVALLVTSLLICCLKKEKASKVVVHTKDPSYPEKMIKFAVMDSTTGSLSTKTGISSLTNISGETESSHVIEDRNIAISIQDLRKVTNNFASENELGHGGFGTVYKGELENGKKIAVKRMECGAVSSRALEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPMGALSRHLFHWKNLKLEPLSLSQRLTIALDVARAMEYLHGLARQTFIHRDLKSSNILLGDDFHAKVSDFGLVKLAPDGQKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRSEESRYLAEWFWQIKSSKETLMAAIDPALEASEEAFESISIVAELAGHCTSRDASHRPDMSHAVSVLSALVEKWRPVDEEFDYGSGIDFSQPLPQLLKDWKESEGKESSYTSAHSEGSIPARPTGFADSFTSADAR 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00840 968 Pfam Leucine rich repeat N-terminal domain 330 368 IPR013210 -
Gma12g00840 968 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Gma12g00840 968 CDD STKc_IRAK 629 899 - -
Gma12g00840 968 SUPERFAMILY Protein kinase-like (PK-like) 602 899 IPR011009 -
Gma12g00840 968 MobiDBLite consensus disorder prediction 462 493 - -
Gma12g00840 968 ProSiteProfiles Protein kinase domain profile. 623 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00840 968 Gene3D Phosphorylase Kinase; domain 1 585 700 - -
Gma12g00840 968 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Gma12g00840 968 MobiDBLite consensus disorder prediction 494 512 - -
Gma12g00840 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Gma12g00840 968 SMART serkin_6 623 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00840 968 MobiDBLite consensus disorder prediction 930 968 - -
Gma12g00840 968 PANTHER OSJNBA0070M12.3 PROTEIN 5 968 - -
Gma12g00840 968 Gene3D Ribonuclease Inhibitor 27 325 IPR032675 -
Gma12g00840 968 SMART LRR_typ_2 191 214 IPR003591 -
Gma12g00840 968 SMART LRR_typ_2 92 114 IPR003591 -
Gma12g00840 968 SMART LRR_typ_2 264 287 IPR003591 -
Gma12g00840 968 SMART LRR_typ_2 115 138 IPR003591 -
Gma12g00840 968 MobiDBLite consensus disorder prediction 449 514 - -
Gma12g00840 968 SUPERFAMILY L domain-like 28 453 - -
Gma12g00840 968 Gene3D Ribonuclease Inhibitor 330 456 IPR032675 -
Gma12g00840 968 Pfam Protein tyrosine and serine/threonine kinase 626 897 IPR001245 GO:0004672|GO:0006468
Gma12g00840 968 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Gma12g00840 968 PANTHER OSJNBA0070M12.3 PROTEIN 5 968 - -
Gma12g00840 968 Gene3D Transferase(Phosphotransferase) domain 1 701 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00840 Gma-Chr12 7880055 7884172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00840 50 899 Receptor kinase-like Gene Family AT5G49660 28.408 2.37e-77 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gma12g00840 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00840 - - gmx:100815045 1838.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00840 12 7880055 7884172 Gma12g00840 12 7880055 7884172 ECH