Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00836 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCGGCTATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATAAGGCTTGCAAGACAGACTGAACGGTGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTAGAGTACCTGCATTCGAATTTTGTTTTACATCGTGACCTAAAGTGTTCCAACATCTTTCTTACCAAAGATCGAGATGTTCGCCTAGGGGATTTCGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCATCTTCGGTGGTAGGAACTCCTAATTACATGTGCCCTGAACTGCTTGCTGATATTCCATATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCATCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAGCATCGGCCAACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAGCCTTACTTGGATCAATATCGTCCATCTTTCAGTCCTCCAACCTCCTGTTCTCCTGAAAAACCAATTTCTGCTGTCAATAATCATCCAAAAAATATGGCTGAAAGTCAAAACAGTAATAGTTCAAGTAGTGACAAAGATAGTTTGATGTCAAATGAGAAAAAAATTGCACCAGCAGGACCGAAGTGTTATAACAAAGCCATTGAGACGGATCAAATATCAATTGATGATGATGGCTCAGAGGATGAAAGTGGCTCTAGTAATGCTAATGCCAAAACAGCTGAGCAAGAGGTGATGAAACCATCTAATAATGAACACCATTCTAATGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCATTGAAGGAAGGAAAAGTTAGAGAAGCAACTTCTCCAATGAGAGGCAACCGCATAAAGCCTGGTGGCATATCAACGCAAAAAATAAACACAGAGACATTGTCTAAATTGCCTAAGCCTACTTTTATTGCTCCTAGTATGAAGCCTAATTTAGAATCACCTGCTGCACTTGCAAGGGCAAGTCCTGACCCTGCAAAAAGAATGATGGGTTCACATTATCCAAAGCATCAGATTCTGATGACAGAAGCCTCACCAAAAGTTAAAGCTAGACATGATTTGACTCCACCATCTGCACTTGCCAAACAAGTAGAAGGAGATGGATTTTCTCCCAAGCCAAGGCAAAGGACTCCTCCAAGCTCACTTAGAAGACCTTCATTTTCTGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCAGCAAATGATACTGGGAAGCTAGGCTCAAATAAAATAATCCAGGAACCTGAGATGAGCCCTTGTCAATTGGCCAATGGCAATGTACCACATATTTCAAGACAAGTTACTAGAGAGCCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGCCTCATCTTCAGTTTCTATCAAAGGATGTGAACTTGCTGATGATGCAAAAACTTTCATTGACATGAGAGAGCAGATGCTTCCTAATCATGAGAAAGTAAACCACATTGTAGGTGTTGAAACATGTCCTGATAGGAGCCCACCTACAACTTGTGCACATTGTAAGATGGCTGAAAAAGTGCCTAAAGAAACCTGTGAGGTTACCATGAATTTTCAGAATACCATAAGTAGTAATGAGAAAGTGAGTTCCAGTTTAACTCAAGATCACCGTGTTGAGGATTCCAAGGTAACACTTGCTTCAGAATGTGATCTTGTCATAAACCAGACAACTATATCTACTACCACTAGCTGTGATAAGAGATCTGTAGACCCCTCTGCTGGAGCCACCAAAGAAATCAAAGAATTTCAAGATATAACCAAGGAAATTCTTTTAACCAAGTCTCCTAAAGAAATCAAAGATTTTCAATATATTTCCAAGGAAATGCCTATGATCAAGTCTCCCAAACAAGCACCTCCAAGTTCTGGAGAAAAGTCTGTTCATGTAGAAGTTAGTCCAGTAAGTGAACCAGATATAGTTAGCCAGCCAGCACTTGGATGTAAGTCCCCAGGTGATGACAAATTCACAGTGAGGGAGCGACTGTCaccggcagctgaaactgttcctgtggttgccactactaaattatcaagccagaaaccggcggctgaaactgttcctgtggttaccactaacaaattatcaagccagaaaGTTTTGCACGAGAAAGTAACTTTGCTGCAGAATCCAGCACAAGAAAGGCACGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTTATCCATGTCATACGCCACAGTAGTTACCGTGTTGGAAGCGAGCAACCAGTTAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTCATCAATGTTGTGAGGGATGATTTGGAAATGAGGAACATAACCTCTCCTTTGACCACCCACAAATCTTCAACTTGCTCTGATGCTGCAAGCTTGAAATCAGACATTTCTGATCAGCTGCAAATGAAGAACTTGAACACTCCTCCAATCCTTAAATCTTCAAGTTTCTCTGATGCTTCGAGCATGAAATCAAGCATTTCTGATCATCCTGGTCTTAAGGAGCAAGATGTGAGTAACCCTTCTCCTATAGTTTCAGAACCTGATTCTGCTGAGCTCAGTAAATGCAACACTCCCATGAATGAAGAGAAACCACCGGCGGCAAAGGAAACATTGGATGTGAAATCTTTCAGGCAGAGAGCAGAGGCACTTGAAGAACTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGACAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACACTCTTCATGA 3222 0.4053 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDRDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYLDQYRPSFSPPTSCSPEKPISAVNNHPKNMAESQNSNSSSSDKDSLMSNEKKIAPAGPKCYNKAIETDQISIDDDGSEDESGSSNANAKTAEQEVMKPSNNEHHSNVESKQPKTIRNIMMALKEGKVREATSPMRGNRIKPGGISTQKINTETLSKLPKPTFIAPSMKPNLESPAALARASPDPAKRMMGSHYPKHQILMTEASPKVKARHDLTPPSALAKQVEGDGFSPKPRQRTPPSSLRRPSFSGRMRLAGIDVPNAANDTGKLGSNKIIQEPEMSPCQLANGNVPHISRQVTREPQKAFERSSKGMQTDSSNSASSSVSIKGCELADDAKTFIDMREQMLPNHEKVNHIVGVETCPDRSPPTTCAHCKMAEKVPKETCEVTMNFQNTISSNEKVSSSLTQDHRVEDSKVTLASECDLVINQTTISTTTSCDKRSVDPSAGATKEIKEFQDITKEILLTKSPKEIKDFQYISKEMPMIKSPKQAPPSSGEKSVHVEVSPVSEPDIVSQPALGCKSPGDDKFTVRERLSPAAETVPVVATTKLSSQKPAAETVPVVTTNKLSSQKVLHEKVTLLQNPAQERHDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTTHKSSTCSDAASLKSDISDQLQMKNLNTPPILKSSSFSDASSMKSSISDHPGLKEQDVSNPSPIVSEPDSAELSKCNTPMNEEKPPAAKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGHSS 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00836 1073 MobiDBLite consensus disorder prediction 346 360 - -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 272 309 - -
Gma12g00836 1073 Coils Coil 999 1036 - -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 560 585 - -
Gma12g00836 1073 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1056 - -
Gma12g00836 1073 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gma12g00836 1073 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 939 1002 - -
Gma12g00836 1073 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00836 1073 CDD STKc_Nek 7 262 - -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 337 377 - -
Gma12g00836 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gma12g00836 1073 MobiDBLite consensus disorder prediction 939 989 - -
Gma12g00836 1073 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Gma12g00836 1073 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00836 1073 MobiDBLite consensus disorder prediction 570 585 - -
Gma12g00836 1073 SUPERFAMILY Protein kinase-like (PK-like) 4 308 IPR011009 -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 272 313 - -
Gma12g00836 1073 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00836 1073 MobiDBLite consensus disorder prediction 485 512 - -
Gma12g00836 1073 MobiDBLite consensus disorder prediction 361 375 - -
Gma12g00836 1073 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1056 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00836 Gma-Chr12 7812115 7818477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00836 14 263 MAP Kinase Kinase Kinase AT1G53570 31.765 1.14e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma12g00836 Pkinase 1.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00836 K08857 - gmx:100784761 2044.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00836 12 7812115 7818477 Gma12g00836 12 7812115 7818477 ECH
Gma12g00836 12 7812115 7818477 Gma11g01461 11 15356809 15362777 GST
Gma13g02781 13 42372973 42379932 Gma12g00836 12 7812115 7818477 PCT
Gma12g01772 12 38311437 38319113 Gma12g00836 12 7812115 7818477 PCT
Gma12g00836 12 7812115 7818477 Gma13g02781 13 42372973 42379932 PCT
Gma12g00836 12 7812115 7818477 Gma12g01772 12 38311437 38319113 PCT