Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00832 ATGTCGGCCTCGCGCGCTCCCCCCGCCGCTAACCCGCCGGACCAGATCATGCACTCCATGAAACGCCAACTCCCCTTCTCCTCCATGAAGCCTCCCTTCGTCGCCGCCGGAGACTATCACCGCCATGACGCCGCCGAAGCCATCGTCGTCAAGACTCCCCTACTGAAGCGGAAGAGTGAAGTGGCTGATTTTGAAGCTGATTCTGGTGATAGGATGACTGCTGGATTCACTGAAGCAGCTAATAGTCCTTTTCAGACACCTGTATCAGGAAAGACGGGAAAGGGAGGCAAATCCTCTAGGCTGACAAAAGGCAACAGAGTTGGAACTCAGACCCCAGGCTCAAACATTGGTTCTCCTGCAGGAAGTAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGGCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTTAAAAATCGAATTCAATGGAAGGGACTAGATGTTTCAAGACCGGGTGAGGCTGATGATAGTTTTGCCAGTTTACAGGCAGAAGTTGAAAATTTAACGATGAAGGAGCGCCAGTTAGACGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGATCTTAGTGAAGATGAAAATAATGACAAGTTGCTTTTTGTTACTGAGGAAGATATAAAGAATTTGCCCTGCTTCCAGAATGAAACCTTGATAGCCATTAAAGCTCCTCATGGAACCACTTTGGAGGTCCCTGATCCCGACGAGGCCGTTGATTATCTGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAAGAGATTAATGGTGCTGATGTTGCACCCAAACTTCCATCAAGTCCAGATGTTACCAAACAACAATCAACAGTGGTCCCAGAGGATAGAGGGAAGCACATAGAAGTGCAGGGACAAGCAGCTCCTGGACCTAGTTCAGATTTTACTCCCTCCCAGGATTTCGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGAACCACTTCAAGAAGATTATTGTATGACTGACGAGAACACTACAACGCCAAGTCATCCTTCAAATGTAGGTGAAGTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1353 0.456 MSASRAPPAANPPDQIMHSMKRQLPFSSMKPPFVAAGDYHRHDAAEAIVVKTPLLKRKSEVADFEADSGDRMTAGFTEAANSPFQTPVSGKTGKGGKSSRLTKGNRVGTQTPGSNIGSPAGSNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQAEVENLTMKERQLDEQIREMQERLRDLSEDENNDKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYLQRRYRIVLRSTMGPIDLYLVSQFEEKFEEINGADVAPKLPSSPDVTKQQSTVVPEDRGKHIEVQGQAAPGPSSDFTPSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELEPLQEDYCMTDENTTTPSHPSNVGEVSSASKPTGG 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00832 450 PANTHER TRANSCRIPTION FACTOR E2FB 17 441 - -
Gma12g00832 450 PANTHER TRANSCRIPTION FACTOR E2F 17 441 IPR015633 GO:0000978|GO:0006357
Gma12g00832 450 MobiDBLite consensus disorder prediction 425 450 - -
Gma12g00832 450 Coils Coil 209 246 - -
Gma12g00832 450 MobiDBLite consensus disorder prediction 81 122 - -
Gma12g00832 450 Pfam E2F/DP family winged-helix DNA-binding domain 133 196 IPR003316 GO:0005667|GO:0006355
Gma12g00832 450 Gene3D - 125 198 IPR036388 -
Gma12g00832 450 Coils Coil 147 167 - -
Gma12g00832 450 SUPERFAMILY E2F-DP heterodimerization region 210 313 IPR037241 -
Gma12g00832 450 MobiDBLite consensus disorder prediction 81 126 - -
Gma12g00832 450 MobiDBLite consensus disorder prediction 325 347 - -
Gma12g00832 450 CDD E2F_DD 207 313 IPR032198 GO:0046983
Gma12g00832 450 Pfam E2F transcription factor CC-MB domain 212 312 IPR032198 GO:0046983
Gma12g00832 450 Gene3D - 203 313 - -
Gma12g00832 450 SMART E2F_TDP_2 131 196 IPR003316 GO:0005667|GO:0006355
Gma12g00832 450 SUPERFAMILY "Winged helix" DNA-binding domain 131 194 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00832 Gma-Chr12 7770931 7776826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00832 15 449 E2F-DP Transcription Factor Family AT5G22220 56.211 3.26e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma12g00832 E2F_CC-MB 5.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00832 K06620 - gmx:100812368 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00832 12 7770931 7776826 Gma12g00832 12 7770931 7776826 ECH
Gma12g00832 12 7770931 7776826 Gma11g01465 11 15390503 15405589 GST