Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00814 ATGGAAGAAGATTATCCACCCGGGTTTCGTTTCTTCCCAACAGAAGAAGAGCTTGTTGGCTTCTACCTACACAACAAGCTAGAAGGCCAAAGAAATGCCATAGCCATAGCCATAGACAGAGTTATCCCAGTTATTGACATCAATGGAGTTGAGCCTTGGAACCTTCCAACACTTGCTGGGGAGCTTTGTCGTGGGGACACGGAGCAATGGTTTTTCTTTTCGCCCGGTCAAGAGAGGGAAACCAGGGGAGGCAGACCCAGCAGAACCACAGCTTGTGGGTATTGGAAGGCTACAGGTTCTCCTTGCTATGTTTACTCTTCTCACAACAAAGTCATTGGGGTGAAGAAATCCATGGTCTTCTACAAAGGAAAAGCACCTATGGGAACAAAAACCAAATGGAAGATGAATGAATACAGAGCCATCCATGTCCCTTCCCAATCCACCCCTGCCACCCTTCATTTGACATGTGAATTCAGCTTGTGTCGGGTATATGTCATATCGGGGAGCTTTCGAGCATTTGATCGACGACCATTAGAGAAAGAAGGAGCAGAGTCGCGGGTTCATAGAATTGAGAATAATTTTGGTGGGGCACGTGCTCACCAAACTTGCCCTCACTCTCAGATGCTAGAAGCTGGAGAATCAAGTATCACAAAGTGGGATGTGAATAATAATAATAATAATAATAATGGGTTCCAACTTCAAGAACCGGTGTGGGAATTGGAATGGGAACATTTTAATTGGCTCTAA 747 0.4525 MEEDYPPGFRFFPTEEELVGFYLHNKLEGQRNAIAIAIDRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPGQERETRGGRPSRTTACGYWKATGSPCYVYSSHNKVIGVKKSMVFYKGKAPMGTKTKWKMNEYRAIHVPSQSTPATLHLTCEFSLCRVYVISGSFRAFDRRPLEKEGAESRVHRIENNFGGARAHQTCPHSQMLEAGESSITKWDVNNNNNNNNGFQLQEPVWELEWEHFNWL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00814 248 ProSiteProfiles NAC domain profile. 5 166 IPR003441 GO:0003677|GO:0006355
Gma12g00814 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 90 5 218 - -
Gma12g00814 248 SUPERFAMILY NAC domain 4 164 IPR036093 GO:0003677|GO:0006355
Gma12g00814 248 Pfam No apical meristem (NAM) protein 6 139 IPR003441 GO:0003677|GO:0006355
Gma12g00814 248 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 218 - -
Gma12g00814 248 Gene3D NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00814 Gma-Chr12 7596230 7597876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00814 1 247 NAC Transcription Factor Family AT5G22380 52.209 1.34e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g00814 NAM 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00814 - - gmx:100808618 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00814 12 7596230 7597876 Gma12g00814 12 7596230 7597876 ECH
Gma12g00814 12 7596230 7597876 Gma11g01493 11 15735617 15737318 GST
Gma13g02796 13 42538116 42540521 Gma12g00814 12 7596230 7597876 PCT
Gma12g01754 12 38154434 38155737 Gma12g00814 12 7596230 7597876 PCT
Gma12g00814 12 7596230 7597876 Gma13g02796 13 42538116 42540521 PCT
Gma12g00814 12 7596230 7597876 Gma12g01754 12 38154434 38155737 PCT