Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00800 ATGCCTTGGGGAAAAGCAATTTCTTCATCAGCTGCTAAGTCATCCAAGCCTGAGGAGCCAGTTGAATCTGATGAGAAGGTTGATTTTGAGGAGGCAAATGATCCAGAGGAAGCAATGGAAGAGGAAATTGAATATGAAGAAGTAgaagaagaagaggaagtggaagagatagaagaggaagtggaagaggtggaagaagaggaggaggtagaggtggaagaagaggaggaggaggaggaggaggaggaggaggaggaagaagtggaggTTGAAGAGGTGGAAGAAGATGATGCCATGCAAAATCATAGCAGTGATGAAGCAAAGGTGGAAGATGAGGATGAGAAGAGAAAACATGCTGAACTCCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGCCTCAGATGAGGATTTGAAATCTTTATGTGAGCGTATTGGTGAAGTTGCAGAGGTTCGAATAATGAAGGGAAAGGATTCTTCTGAGAACAAGGGCTTTGGTTTTGTGACTTTTACAAGTGTGGAATTGGCTTCTAAAGCCATTGAGGAGCTAAATAATACAGAATTCATGGGTAAAAAAATAAAATGTTCGAAATCTCAAGCCAAGCACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGTTGAAGATCTGAAGAAGATTGTAACTGAGATTGGACCTGGAGTTACTGGTGTGGAACTAGTCAAGgatatgaagaacaccaacaataaccgtggctttgcttttattgactattataatcatgcatgtgctgagtattcaaggcaaaagatgatgagcccaacatttaagctaggtgagaatgctccaacagtgagctgggctgatcctaaaaatgccgagtcctctgctgcatctcagGTGAAGGCGGTTTATGTGAAGAACCTGCCAAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACGCCATGGAAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGTCAGGAAAAGAACAGAATTGGCTTTGTACATTTTGCAGAGAGGTCAAATGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAGAAGGTCAACTTTTAGAATGCTCTCTGGCAAAGCCACAGGCTGATCAAAAATCTGGAGGATCAAACACACAGAAGCCAGGACCAGGATTGCTTCCTAGCTATCCACCACATGTTGGCTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCAGGATATGCTGCTCCAGgtcttgcacagCCCTTGTTATATGGAGGAGGTCAAACTCCCGCTGGAATGGCCATGATGCCTATGCTTTTGGCTGATGGACGGATTGGATATGTCTTGCAACAACCAGGAATGCAGCCACAAGCCCCACCCTCACATCATAGAGGTGGCAGGGGCGGTGGTGGCAGTGGGAGTGGCAACAGGAATGCCGGAAGTTCAAGTAAGGGAAGGCACAACAATGATGGCGGCCATGGGCGCAGATACCGGCCATATTAG 1530 0.3582 MPWGKAISSSAAKSSKPEEPVESDEKVDFEEANDPEEAMEEEIEYEEVEEEEEVEEIEEEVEEVEEEEEVEVEEEEEEEEEEEEEEEVEVEEVEEDDAMQNHSSDEAKVEDEDEKRKHAELLSLPPHGSEVYIGGIPHASDEDLKSLCERIGEVAEVRIMKGKDSSENKGFGFVTFTSVELASKAIEELNNTEFMGKKIKCSKSQAKHRLFIGNVPRSWGVEDLKKIVTEIGPGVTGVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMSPTFKLGENAPTVSWADPKNAESSAASQVKAVYVKNLPKNVTQEQLKKLFERHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGQLLECSLAKPQADQKSGGSNTQKPGPGLLPSYPPHVGYGLVGGAYGALGAGYAAPGLAQPLLYGGGQTPAGMAMMPMLLADGRIGYVLQQPGMQPQAPPSHHRGGRGGGGSGSGNRNAGSSSKGRHNNDGGHGRRYRPY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00800 509 Gene3D - 209 288 IPR012677 -
Gma12g00800 509 SUPERFAMILY RNA-binding domain, RBD 299 396 IPR035979 GO:0003676
Gma12g00800 509 MobiDBLite consensus disorder prediction 460 509 - -
Gma12g00800 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 482 - -
Gma12g00800 509 MobiDBLite consensus disorder prediction 24 99 - -
Gma12g00800 509 SUPERFAMILY RNA-binding domain, RBD 126 293 IPR035979 GO:0003676
Gma12g00800 509 Coils Coil 38 101 - -
Gma12g00800 509 MobiDBLite consensus disorder prediction 382 396 - -
Gma12g00800 509 Gene3D - 62 208 IPR012677 -
Gma12g00800 509 CDD RRM_SF 131 202 - -
Gma12g00800 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Gma12g00800 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 290 IPR000504 GO:0003723
Gma12g00800 509 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 206 IPR000504 GO:0003723
Gma12g00800 509 MobiDBLite consensus disorder prediction 1 128 - -
Gma12g00800 509 SMART rrm2_1 303 376 IPR003954 GO:0003676
Gma12g00800 509 SMART rrm2_1 130 202 IPR003954 GO:0003676
Gma12g00800 509 MobiDBLite consensus disorder prediction 379 400 - -
Gma12g00800 509 Gene3D - 289 398 IPR012677 -
Gma12g00800 509 MobiDBLite consensus disorder prediction 100 123 - -
Gma12g00800 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 372 IPR000504 GO:0003723
Gma12g00800 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 271 IPR000504 GO:0003723
Gma12g00800 509 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Gma12g00800 509 PANTHER RNA RECOGNITION MOTIF 1 482 - -
Gma12g00800 509 SMART rrm1_1 130 202 IPR000504 GO:0003723
Gma12g00800 509 SMART rrm1_1 303 376 IPR000504 GO:0003723
Gma12g00800 509 SMART rrm1_1 209 286 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00800 Gma-Chr12 7460233 7465892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00800 131 469 Eukaryotic Initiation Factors Gene Family AT4G34110 25.789 2.24e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00800 K13161 - gmx:100806658 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00800 12 7460233 7465892 Gma12g00800 12 7460233 7465892 ECH
Gma12g00800 12 7460233 7465892 Gma11g01503 11 15877441 15888819 GST