Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00799 ATGTCGGAGGCGGAGGAGCTGCCCCGTTCTATCGTGCGCCGCGTCGTGAAGTATAAGTTGTCCCGTTGCTCCGAAGACGGAGAAATTTCCGTCAGCAAAGACGGTCTTCTCGCATTCTCCGAAAGCGGTAGGATCTTCATCCACTACCTTTCCGCAACGGCTAATGACATATGTAAGGAGTCAAAGAGGCAGATTATCAATGTTGAGAATGTTTTCAAAGCTCTTGAGGAAACTGAGTTCCCTGAGTTTGTTTGCCCTCTAAAAGCTTCCCTTGAAGAGTTTAGGAAGAAGAATGCTAGAAAGAAAGTCGTAGTGTCAAAGGGAAAGGAAGATGAGCCGAAGAAGAAAAGGAAGTTGGAAGGTGAGTCAtctgataaaggcgaaggttctgagaaaggagaagataatgataaaggtgaggattccgataaaggTGTGAGTGGTGATGACCAATGA 456 0.4013 MSEAEELPRSIVRRVVKYKLSRCSEDGEISVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIINVENVFKALEETEFPEFVCPLKASLEEFRKKNARKKVVVSKGKEDEPKKKRKLEGESSDKGEGSEKGEDNDKGEDSDKGVSGDDQ 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00799 151 Coils Coil 58 78 - -
Gma12g00799 151 MobiDBLite consensus disorder prediction 100 151 - -
Gma12g00799 151 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Gma12g00799 151 Gene3D Histone, subunit A 1 146 IPR009072 GO:0046982
Gma12g00799 151 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 2 144 - -
Gma12g00799 151 SUPERFAMILY Histone-fold 7 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00799 Gma-Chr12 7453522 7454634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00799 7 107 CCAAT-HAP3 Transcription Factor Family AT4G14540 27.723 5.75e-08 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gma12g00799 CBFD_NFYB_HMF 2.5e-05 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00799 12 7453522 7454634 Gma12g00799 12 7453522 7454634 ECH
Gma12g00799 12 7453522 7454634 Gma11g01504 11 15889299 15891126 GST