Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00796 ATGTACACTCATCAGCAACATCAAGGAAAGAACATTCACTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCAGATGTTCCTTCAAACAGGAAATGGCTCTGGTGATTCTGGACTTGTTCTCTCAACTGATGCTAAGCCTAGATTGAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCTGTGCAGCAATTAGGAGGAGCTGACAAGGCAACTCCAAAAACGGTAATGAAACTCATAGGGATTCCGGGTCTTACCTTATATCATCTGAAGAGCCATCTCCAGAAATACAGATTGAGCAAGAGTCTGCATGGACAAAGTAACAATATGACACACAAAATAACCATAAATTCAGGTGCAGCAACAGACGAAAGACTCAGAGAAAATAACGGAACTCATATGAATAGTTTAAACCTTGCCCCTCAGTCTAACAACAAAGATTTATACATAAGTGAGGCACTGCATATGCAAATAGAGGAGCAGAGAAGACTAAATGAGCAACTTGAGGTGCAAAGACTTCTGCAGCTACGTATAGAGGCTCAAGGAAAATACCTTCAGGCTGTGTTGGAGAAAGCTCAAGAAACACTTGGAAGACAGAATTTGGGAGCAGTAGGACTTGAAGCTACCAAACTTCAACTCTCAGAGCTAGTGTCAAAAGTGTCCTCTCAGTGTCTGAATTCAGCATTTTCAGATCGGCTGAAGGAGATACAAGGATGTAGCCCCCACCAACAAACACAAACCAACCAGCCAAATACAAATGACTGTTCCATGGACAGTTGCCTCACATCTTGTGAGGGATCACAAAAGGAGCAAGAGATACAAAATGGAGGGATGAGCTTAAGACCCTTCAATGTTCACACATTCATGGAAAGAAAGGAAGTCATAGAGGGTCCAAATCTTAATAATCTACCAAACACTGACCTCAATTGGTGTGATCCAGTGAAGAAGAATACCTTCCTTACCCCATTGAGCATGCATGCAGATAAAAGAAGTCCAAGCAACTTGTCTATGAGCATTGGACTTGAAGGAGAAACTGAGAATGGAAGCACCATTAGGACAGAATCAGTGAAACCGGTGGCTGATAAAGTTTCTCAAGATTATGGATTGCCATCTAATTACTTTGCTGCTTCAAAACTGGACCTAACCACTGAAGATAATAAAGACACTAAAACGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAACTGA 1218 0.4163 MYTHQQHQGKNIHSSSRMPIPSERQMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRLSKSLHGQSNNMTHKITINSGAATDERLRENNGTHMNSLNLAPQSNNKDLYISEALHMQIEEQRRLNEQLEVQRLLQLRIEAQGKYLQAVLEKAQETLGRQNLGAVGLEATKLQLSELVSKVSSQCLNSAFSDRLKEIQGCSPHQQTQTNQPNTNDCSMDSCLTSCEGSQKEQEIQNGGMSLRPFNVHTFMERKEVIEGPNLNNLPNTDLNWCDPVKKNTFLTPLSMHADKRSPSNLSMSIGLEGETENGSTIRTESVKPVADKVSQDYGLPSNYFAASKLDLTTEDNKDTKTSCKQLDLNGFSWN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00796 405 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Gma12g00796 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 405 IPR044848 GO:0003700
Gma12g00796 405 Coils Coil 152 172 - -
Gma12g00796 405 MobiDBLite consensus disorder prediction 1 20 - -
Gma12g00796 405 PANTHER MYB-RELATED PROTEIN 2 4 405 - -
Gma12g00796 405 Gene3D - 45 103 - -
Gma12g00796 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Gma12g00796 405 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Gma12g00796 405 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Gma12g00796 405 Pfam MYB-CC type transfactor, LHEQLE motif 151 196 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00796 Gma-Chr12 7429409 7432310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00796 78 405 G2-like Transcription Factor Family AT3G04030 48.665 3.11e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma12g00796 Myb_DNA-binding 7.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00796 - - gmx:100805237 775.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00796 12 7429409 7432310 Gma11g01507 11 15911822 15915402 GST
Gma13g02807 13 42617105 42620249 Gma12g00796 12 7429409 7432310 PCT
Gma12g01744 12 38048878 38051950 Gma12g00796 12 7429409 7432310 PCT
Gma12g00796 12 7429409 7432310 Gma13g02807 13 42617105 42620249 PCT
Gma12g00796 12 7429409 7432310 Gma12g01744 12 38048878 38051950 PCT