Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00788 ATGGGTTTGATGGAGTGCAATGTGGAGGACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTTAAACCATGTTCTTCTCCTAATTCATATCTAAATAATTCCAATACAATATCATACTCATCTTCTTCTTCTCCTTCTTCATCTTCTTTTTCTCTTACTCAGAATGAGTTTGTTCAGGAAACTATCCAATTCTTGCCAATTTTAAGTGAGAAGGCCTCAAAAGATGAAGATCAAAGTTTTGAGGTGAAAGAGGAAAAGGTTGAACAAGTAACTGTGGCTTTGCACATTGGATTGCCTGACAGTAATAAAGGGCATGCTGATGAGGTTGATGAGAAGATGATTTTCCATGTTAAGGAAGAAGAAGAGTCATCAAAGAGAAGCTTCCATGGTTGCTCCTTTAACAACCAAGAGAGAAGGTTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCTATGCAGTTTGCTTGCTCCATTTGTAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCTGCAATGTTAAGGTTACCATGCTATTGCTGTGCTCAAGGATGCAAGAACAACATCAATCATCCAAGGGCCAAGCCATTGAAGGACTTCAGAACCCTCCAAACCCATTACAAAAGAAAACATGGGACAAAGCCATTCATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGCTCAGACTTCAAGCACAAGAGATCCCTAAAGGATCATATTAGGTCTTTTGGAAAGGGACATAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTACTGGCTCTGATGAAGATGAAGTTAATGCTCATCATACATGA 972 0.4074 MGLMECNVEDNKNLYLHAPTFIEWLKPCSSPNSYLNNSNTISYSSSSSPSSSSFSLTQNEFVQETIQFLPILSEKASKDEDQSFEVKEEKVEQVTVALHIGLPDSNKGHADEVDEKMIFHVKEEEESSKRSFHGCSFNNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECITGSDEDEVNAHHT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00788 323 Gene3D Classic Zinc Finger 239 299 - -
Gma12g00788 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
Gma12g00788 323 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
Gma12g00788 323 PANTHER ZINC FINGER PROTEIN WIP2 1 321 IPR043584 GO:0003700|GO:0010468
Gma12g00788 323 SUPERFAMILY beta-beta-alpha zinc fingers 229 263 IPR036236 -
Gma12g00788 323 SUPERFAMILY beta-beta-alpha zinc fingers 150 182 IPR036236 -
Gma12g00788 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 263 IPR013087 -
Gma12g00788 323 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 321 - -
Gma12g00788 323 Pfam Zinc finger, C2H2 type 159 178 IPR013087 -
Gma12g00788 323 SMART c2h2final6 243 263 IPR013087 -
Gma12g00788 323 SMART c2h2final6 159 181 IPR013087 -
Gma12g00788 323 SMART c2h2final6 206 238 IPR013087 -
Gma12g00788 323 Gene3D Classic Zinc Finger 158 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00788 Gma-Chr12 7309491 7313249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00788 7 311 C2H2 Transcription Factor Family AT1G08290 56.305 2.26e-125 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00788 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00788 - - gmx:100802773 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00788 12 7309491 7313249 Gma12g00788 12 7309491 7313249 ECH
Gma12g00788 12 7309491 7313249 Gma11g01514 11 16037114 16040850 GST
Gma13g02812 13 42671486 42674795 Gma12g00788 12 7309491 7313249 PCT
Gma12g01739 12 37949504 37952867 Gma12g00788 12 7309491 7313249 PCT
Gma12g00788 12 7309491 7313249 Gma13g02812 13 42671486 42674795 PCT
Gma12g00788 12 7309491 7313249 Gma12g01739 12 37949504 37952867 PCT