Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma12g00780 | ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTACGCGAAAGCGTTTCAACTTTACATGAACGCGTTGGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACAAGGCCCAAGACGAAGCCCAAGGACGGAGGCAAAGATGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTACGGGCCGGGCTCAACTCCGCTATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATATTCGTTGATGAAATAGACTCTCTATGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTTGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGAATCCTGA | 1032 | 0.5058 | MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCES | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma12g00780 | 343 | Pfam | ATPase family associated with various cellular activities (AAA) | 168 | 297 | IPR003959 | GO:0005524|GO:0016887 | |
Gma12g00780 | 343 | SMART | smart | 2 | 79 | IPR007330 | - | |
Gma12g00780 | 343 | CDD | AAA | 134 | 297 | - | - | |
Gma12g00780 | 343 | CDD | MIT_VPS4 | 4 | 76 | IPR045253 | - | |
Gma12g00780 | 343 | MobiDBLite | consensus disorder prediction | 73 | 110 | - | - | |
Gma12g00780 | 343 | SUPERFAMILY | MIT domain | 2 | 82 | IPR036181 | - | |
Gma12g00780 | 343 | Gene3D | - | 6 | 75 | - | - | |
Gma12g00780 | 343 | Gene3D | - | 126 | 297 | IPR027417 | - | |
Gma12g00780 | 343 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 341 | - | - | |
Gma12g00780 | 343 | MobiDBLite | consensus disorder prediction | 91 | 110 | - | - | |
Gma12g00780 | 343 | ProSitePatterns | AAA-protein family signature. | 269 | 288 | IPR003960 | GO:0005524|GO:0016887 | |
Gma12g00780 | 343 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN | 1 | 341 | - | - | |
Gma12g00780 | 343 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 121 | 337 | IPR027417 | - | |
Gma12g00780 | 343 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
Gma12g00780 | 343 | Gene3D | - | 298 | 339 | - | - | |
Gma12g00780 | 343 | SMART | AAA_5 | 163 | 299 | IPR003593 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma12g00780 | Gma-Chr12 | 7265271 | 7269176 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma12g00780 | 162 | 343 | Calmodulin-binding Proteins | AT3G56690 | 38.172 | 9.70e-36 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma12g00780 | K12196 | - | gmx:100791614 | 656.751 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma12g00780 | 12 | 7265271 | 7269176 | Gma12g00780 | 12 | 7265271 | 7269176 | ECH | |
Gma11g01520 | 11 | 16093474 | 16097622 | Gma12g00780 | 12 | 7265271 | 7269176 | ECH | |
Gma12g00780 | 12 | 7265271 | 7269176 | Gma11g01520 | 11 | 16093474 | 16097622 | GST | |
Gma13g02814 | 13 | 42699430 | 42703354 | Gma12g00780 | 12 | 7265271 | 7269176 | PCT | |
Gma12g01736 | 12 | 37910679 | 37918143 | Gma12g00780 | 12 | 7265271 | 7269176 | PCT | |
Gma12g00780 | 12 | 7265271 | 7269176 | Gma13g02814 | 13 | 42699430 | 42703354 | PCT | |
Gma12g00780 | 12 | 7265271 | 7269176 | Gma12g01736 | 12 | 37910679 | 37918143 | PCT |