Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00780 ATGTATAGCAATTTCAAAGAGCAAGCAATAGAGTACGTGAAACAAGCGGTAGATGAAGACAATAAGGGAAACTACGCGAAAGCGTTTCAACTTTACATGAACGCGTTGGAGTATTTCAAAACGCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCCGAGGAGATCCGGGCCGTCCTCGACGATGGGCCCAGCGGCCCGGCCTCCAGCGGGGACGCCGCGGTCGCCACAAGGCCCAAGACGAAGCCCAAGGACGGAGGCAAAGATGGAGACGGCGAGGATCCCGAGCAGGCCAAGCTACGGGCCGGGCTCAACTCCGCTATCGTTAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCGGGGCTTGAGAGCGCCAAGCAGGCTTTGCAGGAAGCGGTTATCTTGCCCGTGAAGTTTCCGCAGTTCTTCACTGGTAAACGACGACCTTGGAGAGCGTTTTTGTTGTACGGACCGCCGGGGACGGGTAAATCGTATTTGGCCAAGGCCGTTGCCACAGAAGCTGATTCTACGTTTTTCAGTGTTTCTTCGTCAGACCTGGTTTCAAAGTGGATGGGAGAAAGTGAAAAGCTGGTCTCAAATCTTTTCCAAATGGCACGCGAAAGTGCACCTTCTATCATATTCGTTGATGAAATAGACTCTCTATGTGGTCAGCGTGGAGAAGGGAATGAGAGTGAAGCTTCAAGGCGTATTAAAACTGAGCTTCTGGTGCAGATGCAGGGTGTTGGACACAATGATCAGAAAGTTCTTGTTCTAGCAGCTACAAATACACCTTATGCTCTAGACCAGGCAATAAGGCGGCGTTTCGATAAGCGTATATACATACCCCTACCTGATTTAAAGGCTCGCCAACACATGTTCAAGGTGCACCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTCGAACATTTGGCTCGCAAGACAGAGGGGTTTTCAGGTTCAGATATATCTGTCTGTGAATCCTGA 1032 0.5058 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCES 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00780 343 Pfam ATPase family associated with various cellular activities (AAA) 168 297 IPR003959 GO:0005524|GO:0016887
Gma12g00780 343 SMART smart 2 79 IPR007330 -
Gma12g00780 343 CDD AAA 134 297 - -
Gma12g00780 343 CDD MIT_VPS4 4 76 IPR045253 -
Gma12g00780 343 MobiDBLite consensus disorder prediction 73 110 - -
Gma12g00780 343 SUPERFAMILY MIT domain 2 82 IPR036181 -
Gma12g00780 343 Gene3D - 6 75 - -
Gma12g00780 343 Gene3D - 126 297 IPR027417 -
Gma12g00780 343 PANTHER AAA DOMAIN-CONTAINING 1 341 - -
Gma12g00780 343 MobiDBLite consensus disorder prediction 91 110 - -
Gma12g00780 343 ProSitePatterns AAA-protein family signature. 269 288 IPR003960 GO:0005524|GO:0016887
Gma12g00780 343 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 341 - -
Gma12g00780 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 337 IPR027417 -
Gma12g00780 343 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gma12g00780 343 Gene3D - 298 339 - -
Gma12g00780 343 SMART AAA_5 163 299 IPR003593 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma12g00780 Gma-Chr12 7265271 7269176 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00780 162 343 Calmodulin-binding Proteins AT3G56690 38.172 9.70e-36 135
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00780 K12196 - gmx:100791614 656.751
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00780 12 7265271 7269176 Gma12g00780 12 7265271 7269176 ECH
Gma11g01520 11 16093474 16097622 Gma12g00780 12 7265271 7269176 ECH
Gma12g00780 12 7265271 7269176 Gma11g01520 11 16093474 16097622 GST
Gma13g02814 13 42699430 42703354 Gma12g00780 12 7265271 7269176 PCT
Gma12g01736 12 37910679 37918143 Gma12g00780 12 7265271 7269176 PCT
Gma12g00780 12 7265271 7269176 Gma13g02814 13 42699430 42703354 PCT
Gma12g00780 12 7265271 7269176 Gma12g01736 12 37910679 37918143 PCT