Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00773 ATGAGCGGCGATGGCCGGAGACGTGACCGGAGAGACAACAGAGCATCCAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCGAAATTAGGGTTCGATCTCTTCTCAGAAGGTGAAAAGCGTCTAGGATGGTTACTCACTTTTGCATCCTCTTCTGTTGACGATGAAGACAGTTACAAAGTGTACAGTTGCGTTGATCTTTACTTTGTTGCACAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCCTATTTCTATGTAGCTACAAAGGATAAAATGGAGATTGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAAAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGACCTGATGCCTACTGTTGAAAGAAATAAGGCCAAGTCTGATGCTGCAGAAGCTTTTTTGTCCGTGTCAACAGAAAGAAGCAGAGAACATAGACCTCAAGATTTTCTAGATTGCATAACCGATGTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGTCCAGTAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGCGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGATTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGCTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACGTATAACGGTGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTCAAATGCGATATGAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGGAGCCAAGGCCTGAAGGCAGTTACAAAAGCAAAGTTGGGATATGATCCATTGGAGGTGAATCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTGTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGTCCTAACAAACATCAATCTGACCCAGAGAAGTTTTATAATAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAATGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCCATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGATGCACCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCCATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCTAAGAAAAGTGACTATTATGCTTTAAAGACACAAATTGAATCAGAGTTTGTTGATGATTCTGAGAAGAACAACAAAGCCTTGACCCACTATTCTGAGAAGTCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCTGTTACTGAACTTCGAGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGATACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAGTTGTCAGAGGCCAAGGCTAGTGGAAATTCTATGAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATACGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCCCGCTTACTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCGGAAAATTTCACTTTTAAAACGAAAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACACAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACTTATACAACTCACAGTGAATGCTCTATTGAATTTGAGGTGGATGGACCATACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTCGCAGAGCTTAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACTTTAGAGGAATGCTATTCAGCTGTTGCTTCAGTGGCAAATGGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTAGCTGATTATGGTCAGCAAAAATCTTGTGCTGTTACCACTGCTAGACGTCTGGCTGACTTTCTTGGCGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACACCAGTAAGTGAGCGTGCTGTTCCTGTAGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGCCTTTAAATCAATGAATAGGAATGAACACTCAAAAAGGCATGATGACTCAACTCGTGTCCCTCTTGTCATGGATGGTGATATTGTTAATGAGTTGGAGGACTTTGGAAATAAGGACAGGAGTTCTACATGCAGACCTAGACCAATTATACGGCATTATGAAGCTAACAATGAACAACATTCAAGGAAGGTCAATGATCAAGAAGATGTGGAGCAGCAGCATAATAAACCATTACAACAAAATGTTTACAGAAGTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGCGAACGTGGAAGGATATTCTGGAAAGGAGAAAGAAGCAAAGATTGGAGAATTCAAAGAAATCTGACCGTGTTAGTAGTGTTCTTGAACAAATGAATGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGCGTCACTGGCAGATAATACAACTAGTCCCCAGTTCACTGATAGGCCAATTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCATGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCAGCAATTACTGAAGGATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGAAGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCCAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCACTGGAATTTAATGCAATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAGACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTAAGTGAATTGCACATGAAGACCACAGCAGAATGTGCTTATCTTGAACAATCTATATCTTTCTTTTATTTTTACCATAGCATCTCTGAGGGACGGGCTATATACATTGGATATTTTCCTGCATCAAAAACAATGACTGTTGTGGTGGTTAATCCCTATCAAAACAAAGATTTATCCCCGGTTTTTCTTGAAAGACATTTTCATGATGCTTGCCAGTCTTTGTCTATTGAGCCACCTCCGAGGAATGGCATTAATTTTAAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAAAGAGCAATAAATGGCCACAGTCATGGGAGGGAAAATCACATGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCGAGCTCTGGATAATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAACTGGAATGCAACGTTGTGCTGCATCAGTCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGCTGGGGAACTTTGAACTTGACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGATGATGGCCTTCCAGATTTAGGTGGAATTAACAGTGAACAGAACTGTTTTGTCGACGAGGTCCAACAACCTGCTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAATACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTAAGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACAAATGATCAAAATGGTTTTGACGAGTCTACCTCATGTGTACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCTGATGCAGTTACATCCGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCTGCTCTCCACCAGTTACTCCACAAGGTCATGCAGAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTACAATTGTATTTGCAAACTTTTCAAAGATTATTATAGACACTGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAATCAAGAGATCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAACAAAATCTGATGAAGCTGTAAATAATGAATCTCAAGTAGACATTATATCAAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTTTGTTTTCATCGTTTCTCAGTTCATGTATATTCCCTGGAATTATGCAAAAAAACAAGCACAAATCAGGGCCTCATTGCAGAATGGTGACTCCTGTACACCATCAATTAACATTGGAGCCGCAGAGGCTTTTGAATCAGAAATAACGGAATTTACCAAAGAGCAGATCGGCTCGTACTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGTATGAACAGATTAGAAAACAACCAGAGTACATCGGGCCTTCCTCCACTTACGGGTGATGTCCATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTGGCCCTTGACCAAAGTGTGCAGCATGAAGTTTTGGTCTTGAGAAAAAATTTGCTCAAATATGTTGATGTTAAGGAGTTTGCTCCTGAAGCTAAGTTTCATGGTCCTTGTCATTCCTTCATCTTATCCAATGTCATATGCAGCTATTGTAATGACTGCAGAGACTTGGATTTGTGCCGTGATTCGGCTTTGTTAACTGAGGAGTGGCGTTGTGCGGTTCCACAGTGTGCCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAAACTGTAAGACAAAGAGAACGGCTATACCACCTGCAAGATCTGGTGTGTACCAGGTGCCATCAGGTGAAAGCTGCACATTTGGCTGAGCAATGTGCATGTGCAGGCTCATTTAGGTGCAAGGAAGATGCAAGTGAATTTCGTGAAAAAATGCAAATTTTCTTGAACATAGCTTCTCGTCAGAAATTCCAACTTCTCCAAGAATGTACCTCTTGGATTTTAGAACTTAGATAG 6633 0.404 MSGDGRRRDRRDNRASKKRKLNRTPEEELEAKLGFDLFSEGEKRLGWLLTFASSSVDDEDSYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKAKSDAAEAFLSVSTERSREHRPQDFLDCITDVREYDVPYHVRFAIDNDIRCGQWYDVGVSSNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNAQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFKCDMNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSEKNNKALTHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDPKKKFTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKRHDDSTRVPLVMDGDIVNELEDFGNKDRSSTCRPRPIIRHYEANNEQHSRKVNDQEDVEQQHNKPLQQNVYRSVDYQGWLQIKKRTWKDILERRKKQRLENSKKSDRVSSVLEQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLIGQFFAWVVVDGSMHKIHVSVPRVFYLNSRSAITEGFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASQKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTAECAYLEQSISFFYFYHSISEGRAIYIGYFPASKTMTVVVVNPYQNKDLSPVFLERHFHDACQSLSIEPPPRNGINFKVDYVAHVKDAEAVMQRAINGHSHGRENHMPMVAVIECPNVQLVKLGIRALDNFPCLSVPYNARDSQYQILGWQQVAAKTGMQRCAASVQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINSEQNCFVDEVQQPALTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLRFGHELDSGAFSTNDQNGFDESTSCVQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPTKSDEAVNNESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEITEFTKEQIGSYFTHKLLGIVHDIGLHMKGMNRLENNQSTSGLPPLTGDVHRGDASLEFIKHVCAVLALDQSVQHEVLVLRKNLLKYVDVKEFAPEAKFHGPCHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCAQPYDREVMENALLQTVRQRERLYHLQDLVCTRCHQVKAAHLAEQCACAGSFRCKEDASEFREKMQIFLNIASRQKFQLLQECTSWILELR 2210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00773 2210 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 32 2207 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Gma12g00773 2210 CDD POLBc_epsilon 505 1134 - -
Gma12g00773 2210 Gene3D Palm domain of DNA polymerase 765 949 IPR023211 -
Gma12g00773 2210 SMART polmehr3 241 854 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma12g00773 2210 SMART DUF1744_2 1511 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gma12g00773 2210 Gene3D DNA Polymerase, chain B, domain 1 53 228 - -
Gma12g00773 2210 Coils Coil 1216 1236 - -
Gma12g00773 2210 CDD DNA_polB_epsilon_exo 242 445 - -
Gma12g00773 2210 MobiDBLite consensus disorder prediction 1204 1239 - -
Gma12g00773 2210 Gene3D - 953 1137 IPR042087 -
Gma12g00773 2210 Pfam DNA polymerase family B, exonuclease domain 74 402 IPR006133 -
Gma12g00773 2210 Pfam DNA polymerase family B 767 1076 IPR006134 GO:0000166|GO:0003677
Gma12g00773 2210 SUPERFAMILY DNA/RNA polymerases 488 1127 IPR043502 -
Gma12g00773 2210 Gene3D - 240 470 IPR036397 GO:0003676
Gma12g00773 2210 Pfam Domain of unknown function (DUF1744) 1529 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Gma12g00773 2210 MobiDBLite consensus disorder prediction 1 27 - -
Gma12g00773 2210 MobiDBLite consensus disorder prediction 1204 1245 - -
Gma12g00773 2210 SUPERFAMILY Ribonuclease H-like 64 492 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00773 Gma-Chr12 7132599 7155381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00773 5 2207 Core DNA Replication Machinery Family AT2G27120 67.514 0.0 3019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00773 K02324 - gmx:100812003 4434.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00773 12 7132599 7155381 Gma12g00773 12 7132599 7155381 ECH