Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00750 ATGGAACCGCCGGCTGCTCGACCGAGGGGTCGACCGAGGAAACGAAGAAGAAAGGAGGAGGAGGAGAATGAGGCCGAAGCAAAAAGGCAGGCTATGGGAACGCGAGCCATAGCTTTGGTAGGGAGGTACGTGCTCAAGGATTTTCCCGGAAACGGAATTTTTCTCGGGAAAGTGGTGTACTATGAGTGCGGATTGTACCGGGTGAGTTACGAGGATGGCGATTTTGAGGATCTCGACAGTGGAGAGGTGCGCACCATTCTCGTGAAAGATGATGAGGAGTTTGATAAAGACTTCGCCCGGAGGAGGGCCGCGTTGGAGAAATTGGTGGCGAAGAAGAATAGTGTAAAGGCCAAAGATGTTTCGGAGAGCCGTGGTGAAGGGAGGGAGGAGCAATCGGCCGTTGGGGAGGCTGAATTGAAAGGTGGGTTGGTGTTGGAGAAAAATGAAGGAGAAGGGAACGAAAATGATATGGAGGATGATTCTTCCAGTGACTCAAGCTTCGGGGAAATCGAGTCTGGGACTACTGATGCAGAGTTACTGCCGCCTATGCCGCTGCCGCCGGAGTTGCCCTCGTCGTCCGGCACCATTGGTGTACCGGAGGAGTCTGTATCCCATTTGTTTGCTGTATACGGATTCCTCAGATCATTCAGCACCCAGTTATTTCTTATGCCATTCACACTGGACGAGTTTGTGGGTGCTGTAAATTGTCGTGTTCCAAACACGGTGTTCGATGCCGTTCACCTTTCCTTGATGAAAGTGTTGCGGAGGCATCTGGAAGCCCTCTCATCGGAGGGCTCAGAGATTGCTTCCAAATGTCTCAGGTGCTATGATTGGAGCTTGCTGGATTCATTGACTTGGCCAGTTTTTGCAATTCAGTATTTAGTAGTCAGTGGACACACAACTGCTCATGAATGGCGAGGATTTTACAAAGAAGTTTCCACCGATGAATATTATTTGTTGCCTGTGAGTAGGAAGTTGATGATATTGCAAATTCTCTGTGATAATGCTCTGGAATCTGAGGAGATTGTAATGGAAATGAACATTCGGAGGGAATCAGAGGTTGGGATGGATTATGATGGAGAGGATATCCTTCCTTCAGAAGTTGGGCTTAGAAGAGTCCAGCCAAGATATGCCAATACTCCAGCTTCTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTCTATTTCATATTCCAGAGATACAGAAGGCACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTTTGTGGAATGGATGGGATCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGAAGGGCCATGGTATTGTCCCGAGTGCAAAATCAATATGATGGGGCCAACCATTGCAAAGGGAACATCACTTCGAGGGGCGGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGTACCTGCGAACACTTACTTGTGCTGAATATTGGGAATGATGAGTTTTGTCATAGATATTACAATCTGAATGACATTCCCAAGGTTCTCAAAGTGCTTTATGGATCCACGGAGCACAGGGCTATATATCATGATATTTGCATGGCTGTGCTTCAATATTGCAATATTCCAGAAAGTACTTTATTATTTCCTCCTTTGAGTGAAACCCCTCTAAGTCCTGCTACTCAATGCAATGGCAACGGTAGCAGCAACGAGTGCCCTTCTTCCAAGTGCTCTTTGGTAAATGGTCAAATTGGTAACTATGACCATGCAAATGATACAGGGTTTCCTATAAATCTTTCTTCCCAAACCAAAGAAAGCACACAAGCAGGTTTTGAAAAGTGTGAACGCAATGTAACCAATGATCCTGCATACATGGGTTTCTCCTATAAGCCTTTGTTGTACATTAATCACTATGCTCATGGTGATTTTGCTGCATCAGCAGCTGCTAAATTTGCCCTTCTTTCCTCAGAGGAATCTAGATCAGAGGGCCATGTGTCAGACAATCAGAGGAAAACTGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCACTAACAGCTTCGCGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCCTGTGGAAGTTCCAAGAGAAAGGTGTGGCTGGTGCTTTTCTTGTAAAGCCCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCAGCTCTAAGTGCCACAAAAAGTGCTGTAAAAATGCTTGCTGGTTTTTCTCCTATAAGAAGTGGAGAGGCAATACTTCCTAGTATTGCAACTTACATTATATACATGGAGGAATGTCTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTGCAAGCTATAGAAGGCAATGGCGTAAGCAAGTGGAACAGGCACCAACATTTAGTGCTATCAAACCACTTTTACTTAAACTTGAGGAGAACATTCGAACGATTGTTTTTTGTGGGGACTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCTCATCTACTCTTGGAACAGCACAGAAACGTGCACCAAGTGGTAGGCGTTACAAGAAGCGGTTAGCTAATGATGAAGCTACAGCTGATGGTTGCCCTGAAAACTTTGTGTGGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCAGTCTTGCCAAAATCCATGGTCAGGAAAGCAGCACGTCAAGGTGGTTCAAGAAAAATTTCTGGCATTTTTTATGCTGATGGCTCTGAAATTCCCAAGAGAAGTAGACAACTTGTTTGGAGAGTTGCAGTTCAAATGAGTAGGAATGCATCACAGCTGGCACTTCAGGTCAGGTACCTAGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAACATCCAGGATGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGTGACAATAAACTTGTAGAGGGGAAAAGTTGTTATGGAATAGCTTTTGGGAGCCAAAAACATCTTCCTTCTCGGGTGATGAAAAATGTTGTTCAAGTGGAGCAAGATCCAGAAGGAAAGGAAAAGTATTGGTTTTTTGAAACACGTATTCCATTATATTTGATAAAAGAGTATGAAGAAGGTAATGGAAATATGCCATGTAATGAGGAGCACTTGAATACTGCATCTGAGTTGCTGCACAGAAGGCGGTTGAAGGCTATCTGCAAGGACATATTTTTTTACCTAACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTCGGGATGCTCACAAGTGCAATGCATGCCAAGGTTATTGTCACGAGGGCTGTTCAACAAGATCAACAGTCTCGGCAAATGAAGTTGAGTACTTGACTACATGCAAGCAATGCTACCATGCCAGATTACTTGCTCAGAAAGAGAATACTAATGAATCTCCAACCAGTCCATTACTCCTACAAGGACGAGAGAATAACTCTGGGACATTTTTGAATGGATCAAGGCCTAAATCTCATGATCAAGTACTGAAATCTTCCAGGACAAAGGCTAATAATCCCAACGTGAAACAAGTTACTCCTGTGACGGCTTTGAAAGGAACAAAGGCTAAATATTATGAACAAGAACCGACTTCTACCAGGACAAAGGATAATAATCATTTTGGCACGCCTCAAGTTGCTTCTGAGGCCACTTTGACAGGAAAAAAACCTCGCAAAAATTGTTCTTGGGGTATTATATGGCAAAAGAAAAATAATGAAGATACAGACAATGATTTCTGGCTCAGAAACATACTTTTGAAAGGGGGTTCAAACATGCCACAGTTAAAACCTGTTTGTCACTTGTGTCGGAAGCCATATATGTCTGATCTGACGTATATTTGCTGTGAGACATGCCAAAATTGGTATCACGCTGAAGCTGTTGAACTTGAAGAATCCAAAATTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCATACTCTGATTTGAAGCCTAAGAGACAAGAGGGCAAGAAGTCACGCACAAGGACTAAAAAGAAAGAGCATTCTGGAGCAGACTCCGATTCTGGAGCAATCTATTATGATATGAGAGATTGTGAAGTTGctactcctgtctttcatgtagaggatgatcccagtcatgtctttcctgtagagggtgatcctactcacgtctttcctgtagaggatgatcctCTTCTTTTCTCTCTTTCGAGTGTTGAGCTGCTAACAGAACCTAAGATGGAAGGGGATGTTGAGTGGAACAGTGTCCCTGGGCCAGGGCTTCGGAAATTGCCAGTGAGAAGGAATGTTAAGCATGAAGGGGATGGTGATGTTTCTTTTGGAGGTATGCCTGCAGATGTATCTCCACCTTTAGAATATGCCTCTGCTGTTGACTTTGACAACAAGCTGCTGAATGACTCTGATAATGTAAACTATGATGATTACATGGATTTTGAACCCAATACCTATTTCTCTCTAACGGAACTGCTGCAGCCAGATGATGGTAGTCAGTTTGAGGGTGTTGATGTGTCTGCggacttgtcgggatatttggaaaattctagtacccttattcctgaagaacgtggagatgataaaacagaacctgcattttccttgcaagacaccggcggggacttgtcaggatatttggaaaattctattacatttattcctgaagaatgtggagatgttatgacagaacctacattttccttgcaagacacTGGCTTTAGTTGTATGAAATGTTCACAAATGGAACCGGCCCCTGATCTCTTTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAAATACCATCTAGGCTTGGAAGTTGGAGGTGTGGGAATTGCCGGGATTGGTAA 4944 0.4108 MEPPAARPRGRPRKRRRKEEEENEAEAKRQAMGTRAIALVGRYVLKDFPGNGIFLGKVVYYECGLYRVSYEDGDFEDLDSGEVRTILVKDDEEFDKDFARRRAALEKLVAKKNSVKAKDVSESRGEGREEQSAVGEAELKGGLVLEKNEGEGNENDMEDDSSSDSSFGEIESGTTDAELLPPMPLPPELPSSSGTIGVPEESVSHLFAVYGFLRSFSTQLFLMPFTLDEFVGAVNCRVPNTVFDAVHLSLMKVLRRHLEALSSEGSEIASKCLRCYDWSLLDSLTWPVFAIQYLVVSGHTTAHEWRGFYKEVSTDEYYLLPVSRKLMILQILCDNALESEEIVMEMNIRRESEVGMDYDGEDILPSEVGLRRVQPRYANTPASEDKEATKFVSASNAVNQPGSSISYSRDTEGTEDGDVDRNGDECRLCGMDGILLCCDGCPSAYHSRCIGVLKNHIPEGPWYCPECKINMMGPTIAKGTSLRGAEIFGKDLYGQLFMGTCEHLLVLNIGNDEFCHRYYNLNDIPKVLKVLYGSTEHRAIYHDICMAVLQYCNIPESTLLFPPLSETPLSPATQCNGNGSSNECPSSKCSLVNGQIGNYDHANDTGFPINLSSQTKESTQAGFEKCERNVTNDPAYMGFSYKPLLYINHYAHGDFAASAAAKFALLSSEESRSEGHVSDNQRKTASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCFSCKAPASSKRGCMLNHAALSATKSAVKMLAGFSPIRSGEAILPSIATYIIYMEECLRGLVVGPFLSASYRRQWRKQVEQAPTFSAIKPLLLKLEENIRTIVFCGDWVKLMDDWLVEFSMVQSASSTLGTAQKRAPSGRRYKKRLANDEATADGCPENFVWWRGGKFTKFIFQKAVLPKSMVRKAARQGGSRKISGIFYADGSEIPKRSRQLVWRVAVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDNKLVEGKSCYGIAFGSQKHLPSRVMKNVVQVEQDPEGKEKYWFFETRIPLYLIKEYEEGNGNMPCNEEHLNTASELLHRRRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDAHKCNACQGYCHEGCSTRSTVSANEVEYLTTCKQCYHARLLAQKENTNESPTSPLLLQGRENNSGTFLNGSRPKSHDQVLKSSRTKANNPNVKQVTPVTALKGTKAKYYEQEPTSTRTKDNNHFGTPQVASEATLTGKKPRKNCSWGIIWQKKNNEDTDNDFWLRNILLKGGSNMPQLKPVCHLCRKPYMSDLTYICCETCQNWYHAEAVELEESKISSVLGFKCCKCRRIKSPVCPYSDLKPKRQEGKKSRTRTKKKEHSGADSDSGAIYYDMRDCEVATPVFHVEDDPSHVFPVEGDPTHVFPVEDDPLLFSLSSVELLTEPKMEGDVEWNSVPGPGLRKLPVRRNVKHEGDGDVSFGGMPADVSPPLEYASAVDFDNKLLNDSDNVNYDDYMDFEPNTYFSLTELLQPDDGSQFEGVDVSADLSGYLENSSTLIPEERGDDKTEPAFSLQDTGGDLSGYLENSITFIPEECGDVMTEPTFSLQDTGFSCMKCSQMEPAPDLFCEICGILIHSQCSPWVEIPSRLGSWRCGNCRDW 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00750 1647 MobiDBLite consensus disorder prediction 1227 1241 - -
Gma12g00750 1647 PANTHER PHD FINGER FAMILY PROTEIN 2 1205 - -
Gma12g00750 1647 Pfam PHD-finger 426 468 IPR019787 -
Gma12g00750 1647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1285 1344 IPR013083 -
Gma12g00750 1647 Pfam DDT domain 201 257 IPR018501 -
Gma12g00750 1647 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 399 418 - -
Gma12g00750 1647 ProSitePatterns Zinc finger PHD-type signature. 426 467 IPR019786 -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 116 196 - -
Gma12g00750 1647 PANTHER PHD FINGER FAMILY PROTEIN 1558 1645 - -
Gma12g00750 1647 PANTHER PHD FINGER FAMILY PROTEIN 1207 1552 - -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 1351 1376 - -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 1155 1199 - -
Gma12g00750 1647 ProSiteProfiles Zinc finger PHD-type profile. 423 470 IPR019787 -
Gma12g00750 1647 Coils Coil 11 31 - -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 15 29 - -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 1 31 - -
Gma12g00750 1647 SUPERFAMILY FYVE/PHD zinc finger 398 469 IPR011011 -
Gma12g00750 1647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 474 IPR013083 -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 116 135 - -
Gma12g00750 1647 CDD PHD2_CHD_II 426 467 - -
Gma12g00750 1647 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 2 1205 - -
Gma12g00750 1647 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1558 1645 - -
Gma12g00750 1647 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 303 347 IPR028942 -
Gma12g00750 1647 SMART PHD_3 1097 1145 IPR001965 -
Gma12g00750 1647 SMART PHD_3 1290 1338 IPR001965 -
Gma12g00750 1647 SMART PHD_3 425 468 IPR001965 -
Gma12g00750 1647 SMART PHD_3 1600 1645 IPR001965 -
Gma12g00750 1647 MobiDBLite consensus disorder prediction 1220 1241 - -
Gma12g00750 1647 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1207 1552 - -
Gma12g00750 1647 SUPERFAMILY FYVE/PHD zinc finger 1289 1344 IPR011011 -
Gma12g00750 1647 SMART testlast3 200 260 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00750 Gma-Chr12 6833951 6842439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00750 37 1647 PHD Transcription Factor Family AT5G35210 44.042 0.0 1203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma12g00750 DDT 3.2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00750 12 6833951 6842439 Gma12g00750 12 6833951 6842439 ECH
Gma13g02845 13 42966056 42973724 Gma12g00750 12 6833951 6842439 PCT
Gma12g01706 12 37552801 37560359 Gma12g00750 12 6833951 6842439 PCT
Gma12g00750 12 6833951 6842439 Gma13g02845 13 42966056 42973724 PCT
Gma12g00750 12 6833951 6842439 Gma12g01706 12 37552801 37560359 PCT