LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00744	ATGGGTGAGATCTCGTACTCCGATAAGTACTTCGACGATACTTATGAATATCGACACGTGGTTCTGCCTCCTGAAGTTGCCAAACTGCTTCCTAAGAATCGACTTCTCTCCGAAAATGAGTGTCGAGCAATTGGGGTTCAACAGAGCCGTGGTTGGGTTCATTATGCAATTCATCGACCTGAGCCACAAATAATGCTTTTCAGGAGGCCTTTGAATTGTCAGGAGCAGCAGCAGGAAAACCAGGCCCAAATTATTTGA	258	0.4574	MGEISYSDKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENECRAIGVQQSRGWVHYAIHRPEPQIMLFRRPLNCQEQQQENQAQII	85

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00744	85	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	1	82	-	-
	Gma12g00744	85	Pfam	Cyclin-dependent kinase regulatory subunit	4	70	IPR000789	GO:0016538
	Gma12g00744	85	SMART	CKS_2	3	72	IPR000789	GO:0016538
	Gma12g00744	85	Gene3D	-	1	84	IPR036858	GO:0016538
	Gma12g00744	85	PRINTS	Cyclin-dependent kinase regulatory subunit signature	55	69	IPR000789	GO:0016538
	Gma12g00744	85	PRINTS	Cyclin-dependent kinase regulatory subunit signature	18	32	IPR000789	GO:0016538
	Gma12g00744	85	PRINTS	Cyclin-dependent kinase regulatory subunit signature	3	17	IPR000789	GO:0016538
	Gma12g00744	85	PRINTS	Cyclin-dependent kinase regulatory subunit signature	40	54	IPR000789	GO:0016538
	Gma12g00744	85	PANTHER	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	1	82	-	-
	Gma12g00744	85	ProSitePatterns	Cyclin-dependent kinases regulatory subunits signature 1.	6	24	IPR000789	GO:0016538
	Gma12g00744	85	SUPERFAMILY	Cell cycle regulatory proteins	2	77	IPR036858	GO:0016538

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00744	Gma-Chr12	6769118	6769748	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g00744	1	84	Core Cell Cycle Gene Families	AT2G27970	85.714	1.26e-49	149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00744	K02219		-	gmx:100789531	156.762