Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00728 ATGATGCCAATTAATGAGGCCACAATATCTAGCTCCACAAATGATTTTCAAGAACTGCACATGTTTCCTGTGGCAATGAATGAATATTTGGTTTCACCTTCTCTTGAAGCAAGCTCTTCCTCAGCTTCACACTCTTCAAACTCTCTCCTCTTCCACCTCTTACTTCTCAAGGACAAGCTAGGTCAACTCCAAAACCTAGTTGATGTTCTTGTCTCCCCTCAACAAAACCTACCCGAGTCAACTCCAACGGCAATCTCCACAATCAACAACGCAATCCAAGAAATCATAATGGCAGCCACTTCAATGAGATTCACCTGCCAACAAATGATTCCTAGTTCCTCTTCAGGTACTAATACTACTAATGAATTGCAGCAGAAACAAATTGATCATGGTAGATTATTACCACCACATCATGAATCAAACTTTGTACACAACAATAGGGGTGTGGCTAGTAACAACATTAACATAGTCTCAGATATAAATAGAGGGCAAAGTTTCTTATTATCATCTAGTATTGAGGGAGAGGCATTGGATTGGTTTGCTGAAAGCTACAATAATAATAGAAATAGTGGTAATTATTGTAACCCTAAAGATGATGAAGCAGCCAACATTATTAGCAACATCATGGGGGAGATGAGTGACATAATTGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCATATTTTTGCCAAGTGTGTGGGAAAGGGTTTAAGCGTGACGCCAATTTGAGGATGCACATGAGAGCTCATGGGGAAGAGTACAAAACAAGTTCAGCCTTGTGCAACCCAATGAAAAACAACAAGGAGAACAGTAATTTGTTGTTATTAGGTGCAGAAGAAGGAAGTGGTGCCACAAAGAGATACTCGTGCCCTCAACAAGGGTGTAGGTGGAACCAAAGGCATGCCAAGTTTCAACCCTTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGGAGCCACTGCCCGAAGATGTACGTGTGCAATAGGTGCAACCAGAAACATTTCTCGGTGATTTCTGATTTGAGGACACACGAGAAGCACTGTGGGGACCCCAAGTGGCTGTGCTCGTGTGGCACTACGTTTTCAAGGAAGGACAAGCTTATGGGCCATGTTGCTTTGTTCGTAGGGCACACCCCAGTTACTAGTGGCTTGTCATCATACTCAGGAAAATCAGAACAACTGTAA 1191 0.4223 MMPINEATISSSTNDFQELHMFPVAMNEYLVSPSLEASSSSASHSSNSLLFHLLLLKDKLGQLQNLVDVLVSPQQNLPESTPTAISTINNAIQEIIMAATSMRFTCQQMIPSSSSGTNTTNELQQKQIDHGRLLPPHHESNFVHNNRGVASNNINIVSDINRGQSFLLSSSIEGEALDWFAESYNNNRNSGNYCNPKDDEAANIISNIMGEMSDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTSSALCNPMKNNKENSNLLLLGAEEGSGATKRYSCPQQGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNQKHFSVISDLRTHEKHCGDPKWLCSCGTTFSRKDKLMGHVALFVGHTPVTSGLSSYSGKSEQL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00728 396 Gene3D Classic Zinc Finger 225 253 - -
Gma12g00728 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Gma12g00728 396 SUPERFAMILY beta-beta-alpha zinc fingers 227 265 IPR036236 -
Gma12g00728 396 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 15 389 IPR044300 GO:0010044|GO:0010447
Gma12g00728 396 PANTHER OS08G0562300 PROTEIN 15 389 - -
Gma12g00728 396 SMART c2h2final6 327 349 IPR013087 -
Gma12g00728 396 SMART c2h2final6 289 322 IPR013087 -
Gma12g00728 396 SMART c2h2final6 229 251 IPR013087 -
Gma12g00728 396 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00728 Gma-Chr12 6548443 6549633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00728 48 382 C2H2 Transcription Factor Family AT5G22890 50.296 7.02e-105 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00728 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00728 - - gmx:100803120 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00728 12 6548443 6549633 Gma12g00728 12 6548443 6549633 ECH
Gma12g00728 12 6548443 6549633 Gma11g01577 11 16947929 16949161 GST
Gma13g02862 13 43126085 43127320 Gma12g00728 12 6548443 6549633 PCT
Gma12g01688 12 37318898 37320938 Gma12g00728 12 6548443 6549633 PCT
Gma12g00728 12 6548443 6549633 Gma13g02862 13 43126085 43127320 PCT
Gma12g00728 12 6548443 6549633 Gma12g01688 12 37318898 37320938 PCT