Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00726 ATGGAAGGGTTGGATTCTAATAATTCTACCCACAACAGCATAGCCAAGGGCAAACGCACTAAGAGGATGAGGCTTTTGTCCCCTTGCGGTGTCATCGTTGCTGCCATCACCACCACCACCACCGTCACCTCGAGCACTTCGAGTGCTAATTCGGGTGCCTCGTCCACCACAACCTACGAGAGCGAAGAGGAGGACATGGCGAATTGTTTGATTCTCTTGGCCCAAGGAGGGGAATCTCGTCATCATCCTCGTCACGACAAGCAACAAGTTGAAGATCATGGTCTTGAGAATTGTGATGATGGTGCCATCAAGACAGAAGAAAAGGGTAACAGCAGCAACGTTAACACTACCACCGCCGCAACAACAACTGCTGCTAATAATAATACCAAAGTTGGTTTCTATATTTATGAGTGCAAAACGTGTAACCGAACCTTCCCTTCGTTTCAAGCACTGGGTGGACATAGGGCGAGTCACAAGAAGCCCAAACTCGCGGCTGAAGAGAAAAAACAACCACTGCCACCGTCACCGCTACCACCGCCAACACCGTCTCAATTGCAACACATGATTGTTACCAATTATGATCGGTTTGAGGAGGGTAGCGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTAATAATGGAAACAACAACAAGGGTAAGATTCACGAGTGTTCCATTTGTGGCTCTGAATTCACATCAGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCCACAAACGCCAACAATGTTGTTGACACAACAAGTTGTAACACTGTCATCACCACCACCATTACCGCGGTTCCACCGAGGAATATTTTGCAATTGGATCTTAACCTCCCGGCACCGGAGGATGATCTCCGAGAGGCTAAATTCCAATTTACAGCAACAAGTCAGGTGCTGGTTGGTACTCCGGCTTTGGTGGATTGTCATTATTAA 948 0.4768 MEGLDSNNSTHNSIAKGKRTKRMRLLSPCGVIVAAITTTTTVTSSTSSANSGASSTTTYESEEEDMANCLILLAQGGESRHHPRHDKQQVEDHGLENCDDGAIKTEEKGNSSNVNTTTAATTTAANNNTKVGFYIYECKTCNRTFPSFQALGGHRASHKKPKLAAEEKKQPLPPSPLPPPTPSQLQHMIVTNYDRFEEGSVKSGPPISLQLGNNGNNNKGKIHECSICGSEFTSGQALGGHMRRHRASTNANNVVDTTSCNTVITTTITAVPPRNILQLDLNLPAPEDDLREAKFQFTATSQVLVGTPALVDCHY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00726 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Gma12g00726 315 PANTHER ZINC FINGER PROTEIN ZAT5 1 315 - -
Gma12g00726 315 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Gma12g00726 315 Pfam C2H2-type zinc finger 136 161 - -
Gma12g00726 315 Pfam C2H2-type zinc finger 223 247 - -
Gma12g00726 315 Gene3D Classic Zinc Finger 207 265 - -
Gma12g00726 315 Gene3D Classic Zinc Finger 109 173 - -
Gma12g00726 315 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 315 - -
Gma12g00726 315 MobiDBLite consensus disorder prediction 40 62 - -
Gma12g00726 315 SUPERFAMILY beta-beta-alpha zinc fingers 135 245 IPR036236 -
Gma12g00726 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Gma12g00726 315 MobiDBLite consensus disorder prediction 1 21 - -
Gma12g00726 315 MobiDBLite consensus disorder prediction 152 182 - -
Gma12g00726 315 SMART c2h2final6 136 158 IPR013087 -
Gma12g00726 315 SMART c2h2final6 223 245 IPR013087 -
Gma12g00726 315 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00726 Gma-Chr12 6532347 6533294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00726 1 315 C2H2 Transcription Factor Family AT2G28200 40.719 4.73e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g00726 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00726 - - gmx:100785286 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00726 12 6532347 6533294 Gma12g00726 12 6532347 6533294 ECH
Gma12g00726 12 6532347 6533294 Gma03g01708 03 43256452 43257512 ECH
Gma11g01579 11 16967680 16969026 Gma12g00726 12 6532347 6533294 ECH
Gma03g01708 03 43256452 43257512 Gma12g00726 12 6532347 6533294 ECH
Gma19g01758 19 46895445 46896305 Gma12g00726 12 6532347 6533294 ECH
Gma10g00543 10 5590845 5592009 Gma12g00726 12 6532347 6533294 ECH
Gma13g01255 13 26863900 26864766 Gma12g00726 12 6532347 6533294 ECH
Gma12g00726 12 6532347 6533294 Gma11g01579 11 16967680 16969026 GST
Gma13g02863 13 43134543 43135859 Gma12g00726 12 6532347 6533294 PCT
Gma12g01686 12 37304460 37305861 Gma12g00726 12 6532347 6533294 PCT
Gma12g00726 12 6532347 6533294 Gma13g02863 13 43134543 43135859 PCT
Gma12g00726 12 6532347 6533294 Gma12g01686 12 37304460 37305861 PCT