Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00724 ATGGACAAAATGAATTTTCATCAAGATCCTCTAGTGCACATTAAGGACTTTGAGGTGCATGACTTTGTTGAAGATCCCAACTTAGATCAGTTCATCGACTTGATTCGTTGGGAGCATAAAGATGCCATCTATAACTTCAATTCTAAGTCTATCAATGAAGCATTCATTGTTGATAACTCATTCTTGTCACACCCTGCAATCCCATTTGATCACTGCAATAGTAATTCTGTGAATGTTTATCATCCAATTAGCTATACACATAGCTCCTTCTCTTGTTTTGATGGGGAAGCCAAGGAAGAAGGAGGAGGAGAAGAAGATAACATGGGGGATTCTTCTGCTACAACAACCACCACCACAACAACAACTAAAAGTGTTAATCCTAAGCCAATACCAAAAACTGATAGGTCCAAGACTTTGATTTCTGAGAGGAGGAGAAGAGACCGAATGAAGCAGAAGCTTTATGCATTGTGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAGCTTCAAGCACAAGCCAACATGCTGAAGGCTGAAGTTCAAGGACTTGAAACATCCTTATTGGACAACCGTTCAATCTGCAAGAAGATAATCAAGATGGACATGTTTCAAGTGGATGAAAAAGGGTTTTATGTGAAAATAGTGTGCAATAAAGGAGAAGGGGTGGCTGCCTCACTGTGCAAGTCTCTCGAGTCTTTGACAGGCTTCAATGTTCAGAGTTCAAACTTGGCCACAGTTTCTGACAGTTTTCAACTTACATTTTCATTGAATGCGAAAGGCCCTGAGCCAGAATTTAACCTACCCAACTTGGAAGTTATGGGTGACTGA 867 0.4025 MDKMNFHQDPLVHIKDFEVHDFVEDPNLDQFIDLIRWEHKDAIYNFNSKSINEAFIVDNSFLSHPAIPFDHCNSNSVNVYHPISYTHSSFSCFDGEAKEEGGGEEDNMGDSSATTTTTTTTTKSVNPKPIPKTDRSKTLISERRRRDRMKQKLYALWSLVPNITKMDKASIIGDAVSYMHELQAQANMLKAEVQGLETSLLDNRSICKKIIKMDMFQVDEKGFYVKIVCNKGEGVAASLCKSLESLTGFNVQSSNLATVSDSFQLTFSLNAKGPEPEFNLPNLEVMGD 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00724 288 Gene3D - 128 199 IPR036638 GO:0046983
Gma12g00724 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Gma12g00724 288 MobiDBLite consensus disorder prediction 95 134 - -
Gma12g00724 288 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 205 284 - -
Gma12g00724 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 199 IPR036638 GO:0046983
Gma12g00724 288 Pfam Helix-loop-helix DNA-binding domain 140 183 IPR011598 GO:0046983
Gma12g00724 288 MobiDBLite consensus disorder prediction 108 131 - -
Gma12g00724 288 Coils Coil 179 199 - -
Gma12g00724 288 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 201 - -
Gma12g00724 288 SMART finulus 139 188 IPR011598 GO:0046983
Gma12g00724 288 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 205 284 - -
Gma12g00724 288 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00724 Gma-Chr12 6506020 6507343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00724 11 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 47.712 1.12e-79 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g00724 HLH 6.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00724 - - gmx:100778649 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00724 12 6506020 6507343 Gma12g00724 12 6506020 6507343 ECH
Gma12g00724 12 6506020 6507343 Gma11g01581 11 16992899 16994526 GST
Gma13g02865 13 43159600 43160999 Gma12g00724 12 6506020 6507343 PCT
Gma12g01683 12 37273700 37275073 Gma12g00724 12 6506020 6507343 PCT
Gma12g00724 12 6506020 6507343 Gma13g02865 13 43159600 43160999 PCT
Gma12g00724 12 6506020 6507343 Gma12g01683 12 37273700 37275073 PCT