Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00721 ATGCTCGCATTGCATTTTCGCCCTTGCTTTCCTCTTCCCTTCCATCGCTCCCTAACAGTTAGGGTTTCCTCTCTCCTCTCTTTTCCTCTTTCTCTCTCCTCCGCCGTCCCTCTCCGCGCCATGTCGAAGCCCCCCTCCGCCTTCGATGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCCGCCAAGAAAAAATCCCAATCCCTTTCCCAATCATCACCCTCATCCCCCAAGAAACGCAAAACCCCACCCTCCTCTTCCTCACAAAACCCTAGCGACCTCAAACCTCCTTCCCCACCCAAAACCGTTACACCTCAAGAAGGCGCCGTTAAGCCCGAACCGCTGAAGGTCCGCCACGTGTCATCTTCTTCTTTTTCGCAGGAGAAGACCGCGGAGCTTAAGAAGCAAGCTCCGCAGCTGAAGAAGAAACCCTCCGATTTCGATCCCGCTTCTATAAGTGCATGGGAGAAGGGCCAACCCGTGCCGTTTCTATTTCTCTGCTTGGCCTTCGACATGATTTCTCAAGAATCCGGAAGAATTGTCATCACTGATATTGTTTGCAATCTTCTGAGGACTGTGATGTACTCCACGCCGGAGGATCTTGTTAAGGTCGTTTACCTCTCCGCGAACCGGATTGCGCCCGCTCACGAAGGGATGGAATTGGGTATTGGCGACGCTTCCATCGTCAAGGCGCTTGCTGAGGCGTACGGAAGGACCGAGGTGTGGATTAAGACTCAGTATCAGAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCCTCGCAGCCTATGATGTTTAAGCCCGAAGCATTGACTATTACGAAGGTTTTCAACACTTTTCGTCTTATTGCTAAGGAATCTGGGAAAGAAAGTCAAGAGAAGAAAAAGAATCATATCAAGGCACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGACAAAGTTGCGAATTGGCTATGCTGAGAAAACTCTCTTAGCTGCATTGGGCCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCAGAGATTGTTAAACAAGTCTATTCTGTACTTCCTGACTATGACAAAATAATATCTGCACTGCTTACAGAGGGTCTATGGATGCTTCCAAAGAAATGTAATTTTACTCCTGGTGTTCCAATTGGACCTATGCTATCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGACGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGATCAGTTGAGATTTACAGTAGAAATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCCGCTGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTTATTCTTGATTGTGAAATTGTTGCATATGATCGTTCAACACAGAAGATCCGTTCTTTCCAGATGCTTAGTACTCGGGCTCGCAAGAATGTAGAAATTGAAGATATAACGGTTGGTGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCCGGATTTCTTCAGTTTGCAACAACAATAACATCAAATGATGTTGAGGAAATACAGAATTTTCTTGACCAAGCTGTTGGTGCTAGTTGTGAGGGATTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTTCCAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAGTATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCACGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCTCTGAAGCTGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAACCAAAGGCATACTATAGATTTGGAGAAACAATAAATCCTGATGTCTGGTTTGAAGCCAGTGAGGGCATATCTCTACGATTTCCACGACTACTTCGAGTCAGGCCTGACAAAGCTCCTGAACAGGCCTCATCATCTGAGCAGGTTGCTGAAATGTATAAGGCTCAAAAACACAATCACACGAACAACCAAAATGACGATGAAGATGATGATTGA 2253 0.4496 MLALHFRPCFPLPFHRSLTVRVSSLLSFPLSLSSAVPLRAMSKPPSAFDALMSGARAAAAAKKKSQSLSQSSPSSPKKRKTPPSSSSQNPSDLKPPSPPKTVTPQEGAVKPEPLKVRHVSSSSFSQEKTAELKKQAPQLKKKPSDFDPASISAWEKGQPVPFLFLCLAFDMISQESGRIVITDIVCNLLRTVMYSTPEDLVKVVYLSANRIAPAHEGMELGIGDASIVKALAEAYGRTEVWIKTQYQKKGDLGLVAKESRSSQPMMFKPEALTITKVFNTFRLIAKESGKESQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGYAEKTLLAALGQAAVYTEEHSKPPPDIQSPLEEASEIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKPTVSSFILDCEIVAYDRSTQKIRSFQMLSTRARKNVEIEDITVGVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQNFLDQAVGASCEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKAYYRFGETINPDVWFEASEGISLRFPRLLRVRPDKAPEQASSSEQVAEMYKAQKHNHTNNQNDDEDDD 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00721 750 Pfam DNA ligase N terminus 161 336 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma12g00721 750 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 63 749 - -
Gma12g00721 750 Pfam ATP dependent DNA ligase C terminal region 632 717 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gma12g00721 750 CDD Adenylation_DNA_ligase_I_Euk 392 610 - -
Gma12g00721 750 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 395 613 - -
Gma12g00721 750 Gene3D - 413 612 - -
Gma12g00721 750 Gene3D DNA ligase/mRNA capping enzyme 432 557 - -
Gma12g00721 750 MobiDBLite consensus disorder prediction 715 750 - -
Gma12g00721 750 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 219 692 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gma12g00721 750 MobiDBLite consensus disorder prediction 63 91 - -
Gma12g00721 750 Gene3D - 700 736 IPR012340 -
Gma12g00721 750 Gene3D - 616 699 IPR012340 -
Gma12g00721 750 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 143 394 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma12g00721 750 CDD OBF_DNA_ligase_I 615 734 - -
Gma12g00721 750 PANTHER DNA LIGASE 1 63 749 - -
Gma12g00721 750 Pfam ATP dependent DNA ligase domain 403 607 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma12g00721 750 MobiDBLite consensus disorder prediction 720 738 - -
Gma12g00721 750 MobiDBLite consensus disorder prediction 118 132 - -
Gma12g00721 750 ProSiteProfiles ATP-dependent DNA ligase family profile. 509 645 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma12g00721 750 ProSitePatterns ATP-dependent DNA ligase signature 2. 581 607 IPR016059 GO:0003909
Gma12g00721 750 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 427 435 IPR016059 GO:0003909
Gma12g00721 750 Gene3D - 137 405 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma12g00721 750 SUPERFAMILY Nucleic acid-binding proteins 615 735 IPR012340 -
Gma12g00721 750 MobiDBLite consensus disorder prediction 59 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00721 Gma-Chr12 6465816 6473363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00721 1 749 Core DNA Replication Machinery Family AT1G08130 63.488 0.0 997
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00721 K10747 - gmx:100783155 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00721 12 6465816 6473363 Gma12g00721 12 6465816 6473363 ECH
Gma12g00721 12 6465816 6473363 Gma11g01584 11 17025197 17034742 GST