Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00709 ATGGAGATGGCGGGGCCGGTGACGCAGGGGGACACGGCGGCGCTACTATACTCCTCGGGAACGACCGGATTGAGCAAGGGAGTGGTGCTGACGCACCGGAACTTCATCGCGGCGTCGGTGATGATCGGCATGGACGACGACATCGCCGGGGAGCAAAACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGCATTCGGGCTGGCAGTGGTGACGTACGCGGCGCTGCAGCGAGGGAGCGCGGTGGTGGTTATGGGGAGATTCGAGCTGAAGGCGCTTCTGAGGGCGGTTGAGAAGCACTGGGTGACGAAGCTGTGGCTCGTGCCTCCGATCCTGCTAGCTCTGGCGAAACAGAGCGTGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTTTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGGTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTCCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCGCTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCAAAGGGTAACATTCATCAACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA 918 0.512 MEMAGPVTQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDIAGEQNDVYLCVLPMFHAFGLAVVTYAALQRGSAVVVMGRFELKALLRAVEKHWVTKLWLVPPILLALAKQSVGYGMTETCGIVSLENPRVGVRHTGSTGTLGSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLQRVTFINSVPKTASGKILRRELTAKARSKI 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00709 305 Gene3D - 7 31 - -
Gma12g00709 305 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 121 304 - -
Gma12g00709 305 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 120 - -
Gma12g00709 305 Gene3D - 32 118 - -
Gma12g00709 305 ProSitePatterns Putative AMP-binding domain signature. 15 26 IPR020845 -
Gma12g00709 305 SUPERFAMILY Acetyl-CoA synthetase-like 6 302 - -
Gma12g00709 305 Pfam AMP-binding enzyme 120 184 IPR000873 -
Gma12g00709 305 Pfam AMP-binding enzyme 6 117 IPR000873 -
Gma12g00709 305 Pfam AMP-binding enzyme C-terminal domain 216 291 IPR025110 -
Gma12g00709 305 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 120 - -
Gma12g00709 305 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 121 304 - -
Gma12g00709 305 Gene3D - 120 205 IPR042099 -
Gma12g00709 305 Gene3D - 206 304 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00709 Gma-Chr12 6319940 6323415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00709 1 305 Monolignol Biosynthesis Gene Families AT4G05160 59.946 1.70e-153 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00709 K01904 - gmx:100808944 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00709 12 6319940 6323415 Gma12g00709 12 6319940 6323415 ECH
Gma12g00709 12 6319940 6323415 Gma11g01598 11 17190598 17196841 GST
Gma13g02874 13 43258162 43263598 Gma12g00709 12 6319940 6323415 PCT
Gma12g00709 12 6319940 6323415 Gma13g02874 13 43258162 43263598 PCT