Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00707 ATGGTGTCCGACGCCAGCAAGAAGAAGGCCGCACAGAAGAAGGCCGCCGCCGCCGCCAAGAGAGGTGGAAAGGCCGCCGCCGCCGCCGTTATGGAGGCGTCTTCCAAAGCCGCCAACAAGGTCGCCAACGGAATCGCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGTTCGCATCCTCTCTCCAGAGATATTCGAATAGAGTCTCTATCTGTTACGTTCCATGGGCATGATCTCATTGTTGATTCTGAATTGGAGCTAAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAATCTACACTGCTGACAGCCATTGGTTGTCGGGAACTTCCAATTCCCGATCACATGGATATATATCACCTAACCAGGGAGATTGATGCCTCTGACATGTCTGCATTGGAAGCTGTCATAAGCTGTGACGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAGTTTTGGCTGCACAGGATGACGGAGGTGGTGAATCCCTTGAACGCATTTATGAACGATTGGATGCCCTAGATGCTGCCACTGCAGAAAAGCGTGCTGCTGAAATCTTGCATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAGAAGACGCGTGATTTTTCCGGTGGCTGGAGAATGAGGATTGCGTTAGCACGGGCTTTATTTATGAATCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCATATGCAAAGCAAAAAACTGAAGATCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGGTTTGGCCATGGTTCTGCAAAACTAGCTCGCCAGGCACAGAGTAAGGAGAAAACGCTGGCAAAAATGGAACGTGGTGGACTTGCAGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTCCGTTTTACCGATGTTGGGAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGTCATTTGGTTATACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGACTTGATGCCTAGTGACGGCATGGTAAGGCGTCATAATCATCTTCGAATTGCACAATATCACCAGCATTTGGCAGAAAAGCTAGACATGGAAATGTCTGCTCTACAGTTTATGATTAAAGAATACCCCGGTAATGAGGAAGAGAAGATGAGGGGGGCAATTGGGAAGTTTGGGCTGTCAGGAAAAGCACAGGTGATGCCAATGAAGAACTTGTCAGATGGACAGAGGAGCCGAGTGATATTTGCTTGGTTAGCTTGGAGACAGCCTCAGATGCTTCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCGTTGGCCGAGGCATTGAATGAATGGGATGGTGGCTTGGTGCTTGTAAGCCATGATTTTAGGCTCATAAATCAAGTGGCTCATGAGATATGGGTATGTGCTAATCAATCTGTGACCAGATGGGAGGGTGACATCATGGAATTCAAGGCGCATCTAAAGTCAAAGGCGGGTTTATCTGACTGA 1785 0.4622 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVMEASSKAANKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLKLEKEAEVLAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQFMIKEYPGNEEEKMRGAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKSKAGLSD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00707 594 CDD ABCF_EF-3 379 570 - -
Gma12g00707 594 PANTHER - 1 594 - -
Gma12g00707 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 308 IPR003439 GO:0005524
Gma12g00707 594 Pfam ABC transporter 86 240 IPR003439 GO:0005524
Gma12g00707 594 Pfam ABC transporter 395 526 IPR003439 GO:0005524
Gma12g00707 594 ProSitePatterns ABC transporters family signature. 212 226 IPR017871 GO:0005524
Gma12g00707 594 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 594 IPR003439 GO:0005524
Gma12g00707 594 Gene3D - 68 332 IPR027417 -
Gma12g00707 594 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 594 - -
Gma12g00707 594 SMART AAA_5 404 592 IPR003593 -
Gma12g00707 594 SMART AAA_5 92 294 IPR003593 -
Gma12g00707 594 CDD ABCF_EF-3 68 285 - -
Gma12g00707 594 Pfam ABC transporter 279 355 IPR032781 -
Gma12g00707 594 Coils Coil 286 306 - -
Gma12g00707 594 Gene3D - 344 592 IPR027417 -
Gma12g00707 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 314 IPR027417 -
Gma12g00707 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 573 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00707 Gma-Chr12 6282455 6286918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00707 88 266 Calmodulin-binding Proteins AT2G36910 27.513 6.45e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00707 K06185 - gmx:100777592 1116.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00707 12 6282455 6286918 Gma12g00707 12 6282455 6286918 ECH
Gma12g00707 12 6282455 6286918 Gma11g01600 11 17242263 17246816 GST
Gma13g02875 13 43290042 43296531 Gma12g00707 12 6282455 6286918 PCT
Gma12g01671 12 37048869 37052189 Gma12g00707 12 6282455 6286918 PCT
Gma12g00707 12 6282455 6286918 Gma13g02875 13 43290042 43296531 PCT
Gma12g00707 12 6282455 6286918 Gma12g01671 12 37048869 37052189 PCT