Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00705 ATGTCTCACCAAGTCGAATCTTCCGACTCGAAATCTTGGAAGAAAGACTCTTCCACTTCGATTCTTGAACGGAAGAAATCGCCGAACCGGTTAGTCGTTGACGAAGCAGTTAACGATGACAATTCGGTGGTCGCCATGCACCCTCAAACCTTGAAAAAACTCCAACTTTTCCGCGGAGACACTATCCTCGTCAAGGGGAAGAAACGGAAGGACACGGTTTGCATTGCTCTTCGGGACGAGAATTGTGAAGAATCGAAGATAAGATTGAACAAAGTTTTGAGGTCGAATTTGAGGGTTCGTCTCGGAGATGCTGTGTCTGTGCATTCGTGCCCTGATGTTAAGTATGGGAAACGCGTTCACATTCTTCCCATTGATGATACCATTGAAGGTGTCACTGGCAATCTCTTTGATGCTTACTTGAAACTTATTTTTCATATGCTCTCCCAGACACATGCACGACACATGCACGACATATTTCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAATTGATCCTGGGGAGTATTGTGTGGTTGCTCGAGACACTGAAATATTCTGTGAGAGGGAACCTGTGAAAAGAGAGGATGAAGAAAGGCTGGATGAGGTTGGCTATGATGATGTGGGCTGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTAAGACACCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGCTCTGGTAAGACATTGAAAGCTAGAGCTGTTTCTAATGAAACTGGAGCGTTCTTCTTTTGTATTAATGGCCCAGAGATTATGTCCAAACTGGCTGGAGAGAGTAAAATTGATTCTATTGCACCCAAGCGGGAGAAGACACATGGTGAAGTCGAAAGGAGAATTGTTTTACAACTTTTGACTCTTATGGACGGATTTAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACAAATAGGCCAAATAGTAGCCCCGCTTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGAAGACTTGAAGTCCTTCGTATACATACCAAAAACATGAAGTTTTCAGATGATGTTGATATAGAGAGAATTGCAAAAGATACTCATGGATATGTTGGTGCTGACCTTGCTGCCATTTGCACTGAAGCTGCTCTGCAATGCATCAGGGAGAAAATGGATGTTATTGATTTGGAAGATGAGAACATTGATGCTGAAGTGCTGAATTCTATGACAGTTTCAAATGAGCATTTCCATACCGCTCTAGGAACAAGCAATCCATCTGCTTTACGAGAAACTGTTGTTGAGGTGCCTAATGTCAGCTGGGAGGATATTGGAGGCCTCGAGAATGTCAAGCGCGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAATTTGGGAAGTTTGGTATGTCACCATCAAAAGGAGTTCTCTTCTATGGTCCTCCAGGATGTGGGAAAACGTTGTTAGCAAAAGCAATCGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAGGGCCCAGAATTGCTCACTATGTGGTTTGGTGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTCTTTGATGAGCTTGATTCCATTGCTACTCAGATGCTGGGGGTTGCTGCTGATAGAGTTCTGAATCAACTTCTGACTGAAATGGATGGCATGAATGTCAAAAAGACCGTGTTCATAATTGGGGCAACCAACAGACCTGATATCATTGACTCAGCACTTCTTTGGCCTGGTCGTCTAGATCAATTGATCTATATTCCTCTTCCAGATCAGGAGTCCCGTTATCAAATCTTCAAGGCCTGCATGAGGAAGTCACCTGTCTCAAAAGATGTTGATTTGAGAGCACTAGCTGAGTATACAAAAGGCTTTAGCGGTGCTGATATAACAGAGATATGCCAGCGAGCATGCAAATATGCTATTAGAGAAAACATAGAAAAGGACATAGAGCGTGAGAGAAAGAAAAGAGACAACCTTGAGGCCATGGATGAAGACATTGAGGAGGAAGATGTTGCAGAGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGGGCTTTGGAAGTGGCTTTAATTTTCCAGCAACTGGAGGTAGGACCGTAGGATCTGAACCCTTTGCAACTTCTGCTGGTAGAGCTGATGATGATGATCTCTATAGTTAG 2265 0.4331 MSHQVESSDSKSWKKDSSTSILERKKSPNRLVVDEAVNDDNSVVAMHPQTLKKLQLFRGDTILVKGKKRKDTVCIALRDENCEESKIRLNKVLRSNLRVRLGDAVSVHSCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKLIFHMLSQTHARHMHDIFLVQGGMRSVEFKVIEIDPGEYCVVARDTEIFCEREPVKREDEERLDEVGYDDVGCVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLKARAVSNETGAFFFCINGPEIMSKLAGESKIDSIAPKREKTHGEVERRIVLQLLTLMDGFKSRAHVIVIGATNRPNSSPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKFSDDVDIERIAKDTHGYVGADLAAICTEAALQCIREKMDVIDLEDENIDAEVLNSMTVSNEHFHTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFGKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQMLGVAADRVLNQLLTEMDGMNVKKTVFIIGATNRPDIIDSALLWPGRLDQLIYIPLPDQESRYQIFKACMRKSPVSKDVDLRALAEYTKGFSGADITEICQRACKYAIRENIEKDIERERKKRDNLEAMDEDIEEEDVAEIKAAHFEESMKGFGSGFNFPATGGRTVGSEPFATSAGRADDDDLYS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00705 754 SUPERFAMILY Cdc48 domain 2-like 112 206 IPR029067 -
Gma12g00705 754 CDD AAA 242 353 - -
Gma12g00705 754 SUPERFAMILY ADC-like 26 110 IPR009010 -
Gma12g00705 754 SMART AAA_5 493 626 IPR003593 -
Gma12g00705 754 SMART AAA_5 243 356 IPR003593 -
Gma12g00705 754 CDD AAA 463 624 - -
Gma12g00705 754 SMART CDC48_N_2 30 113 IPR003338 -
Gma12g00705 754 Gene3D - 290 353 IPR027417 -
Gma12g00705 754 Pfam AAA+ lid domain 376 418 IPR041569 -
Gma12g00705 754 Pfam AAA+ lid domain 646 687 IPR041569 -
Gma12g00705 754 MobiDBLite consensus disorder prediction 8 25 - -
Gma12g00705 754 Gene3D - 113 210 - -
Gma12g00705 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 445 IPR027417 -
Gma12g00705 754 Gene3D - 7 112 - -
Gma12g00705 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 717 IPR027417 -
Gma12g00705 754 Gene3D - 628 724 - -
Gma12g00705 754 MobiDBLite consensus disorder prediction 1 25 - -
Gma12g00705 754 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Gma12g00705 754 Pfam ATPase family associated with various cellular activities (AAA) 247 288 IPR003959 GO:0005524|GO:0016887
Gma12g00705 754 Pfam ATPase family associated with various cellular activities (AAA) 497 624 IPR003959 GO:0005524|GO:0016887
Gma12g00705 754 Pfam ATPase family associated with various cellular activities (AAA) 290 353 IPR003959 GO:0005524|GO:0016887
Gma12g00705 754 PANTHER CELL DIVISION CONTROL PROTEIN 48 HOMOLOG E 5 719 - -
Gma12g00705 754 PANTHER AAA-FAMILY ATPASE 5 719 - -
Gma12g00705 754 Gene3D - 211 289 IPR027417 -
Gma12g00705 754 MobiDBLite consensus disorder prediction 730 754 - -
Gma12g00705 754 Coils Coil 677 704 - -
Gma12g00705 754 Gene3D - 355 446 - -
Gma12g00705 754 Gene3D - 447 624 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00705 Gma-Chr12 6272438 6276616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00705 426 711 Calmodulin-binding Proteins AT3G56690 45.704 1.06e-77 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00705 K13525 - gmx:100805946 1301.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00705 12 6272438 6276616 Gma12g00705 12 6272438 6276616 ECH
Gma12g00705 12 6272438 6276616 Gma11g01602 11 17253328 17260162 GST