Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00698 ATGTTTTGGTTTTGCGATCAAAGTCCAGATTCAGCATCTGCTGAAAGGTTAAACGAAACCATAGTCAATGATTATAAGGAGCTAATTTTTGAGTTTGGAACAATAACATGTTGCAAGGTGGTGCTTGAATCAAATGGGCATAGCAAGGGCTATGGTTTTGTTGCCTTTTCTCCTGTTGAGGATGCAAGTAAAGTTTTGAATGAAATGAATGGAAAGATGATTGGACGAAAGCCTGTGTGTGTAGTTGTGACTCACGCAAAGAAGAGAGGAAGGTTTGCTTACAAACTTAGTTTTCTCAAATGCAAGCCCCAGGTACAATTACACCTTTGCCTGTTGGAATCCCTGGATATCATCCAGGGACACCAAGACTTGCCCCTCCTTGGTTGTATTTTGGTCAAGGGGCACCTGGTCTCGTACCACCTCAGCCAGCAGGATATGGTTTTCCAGCAGCACCTCTTCCAAGACATGCGTCCTAGTGTTGTTCCAAATTTCATTATGCCATACCACCTACAGAGACAAGGTTCTTTTGGACAAAGGATGGGTGCTCAAAGAATTAAAAATGTCCAATAG 570 0.4263 MFWFCDQSPDSASAERLNETIVNDYKELIFEFGTITCCKVVLESNGHSKGYGFVAFSPVEDASKVLNEMNGKMIGRKPVCVVVTHAKKRGRFAYKLSFLKCKPQVQLHLCLLESLDIIQGHQDLPLLGCILVKGHLVSYHLSQQDMVFQQHLFQDMRPSVVPNFIMPYHLQRQGSFGQRMGAQRIKNVQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00698 189 PANTHER POLYADENYLATE-BINDING PROTEIN 23 189 - -
Gma12g00698 189 SUPERFAMILY RNA-binding domain, RBD 26 90 IPR035979 GO:0003676
Gma12g00698 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 86 IPR000504 GO:0003723
Gma12g00698 189 SMART rrm1_1 11 81 IPR000504 GO:0003723
Gma12g00698 189 PANTHER RNA BINDING PROTEIN 23 189 - -
Gma12g00698 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 78 IPR000504 GO:0003723
Gma12g00698 189 Gene3D - 6 83 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00698 Gma-Chr12 6209120 6209847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00698 27 81 Eukaryotic Initiation Factors Gene Family AT1G22760 43.636 1.51e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00698 K13126 - jre:108981166 139.043