Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00685 ATGAAGCCACAGCTCAAAATTGCTCTTGCTTTAGTTATTAGCTTGCTTTGGATTCAGCACTCATTTTGTGATGAAAATTCTGAGACATCTAGCTTAAACAAGTGGAGATGTAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTTGCTAATTGTTCAAAGTCATGTGATTGCCACTCAGATTCTGAAGAGAGTGCATCTGTATGGACATGCGTATGTGATTCCAATGGATTTCCCCAAGTGGCAGCTGATGGTCGTAGCTCTAATTGCTTTAGCACTTGCAACTGCACTTGGGGAACCGTCAGCAGGCCGGGAGGTTCAAAGAAGCATGTTTCCAGCAAGATTGTTGTAGTTATACTATTAATATGTGTTATATGCACAACCATGGCATTTCTTGTCTCACTTATATGCCATGTCTACCGAAAGGACAGATGTACAATTCAATCACCAATATTCTCAACAGATAAGGAAACAAGTAGTGGTAGTACCACCAACTTAATTAGTCATAGATCAGGGGCTTCTTCAGTGCCAGAAACAAAATATGCAATAAATTCTCCAATTTATCATATCACAGGTTGTTTTCAGAAAGCCTCTTTCTTATTTGGGAGCCCAAAAGAAACTTATCATGGGAATATTTTTCCATTTTCATTAGCTGAACTGGAAAATGCAACAGAAAACTTTTCATCTTCCAACCTAATTGGGGTAGGGGGAAGTAGTTATGTATACCTTGGTCGGCTGAAAGATGGTAGCAATGTGGCAGTTAAACGACTAAAAGACCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTAGCTAGACTTCACCATTGTCATTTGGTTCCTTTGCTTGGATACTGCTCCGAGTTAAAAGGAAAACATGTTCAGAGATTACTAGTATTTGACTACATGGCCAATGGAAATTTGAGGGACTGTTTAGATGGAGTTTCTGGAAAACATATCGATTGGGCCACTCGTGTTATGATTGCAATAGGAGCTGCAAGGggcttggagtatctccatgaagcagctgctccaagaattcttcatagagatgtcaaatcaactaacattcttctggatgaaaattggcaagcaaaaATAACTGATCTTGGCATGGCTAAAAACTTGAGATCTGATGACCTCCCCAGCTGTTCAAATTCTCCAGCAAGAATGCAGGGAACATTTGGCTATTTTGCACCTGAGTATGCCATTGTTGGTAGAGCTTCTCTTGAGTCAGACGTCTTTAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGCCATCCCATCCATAAATCTACAGGCAAAGAAGAAAGCCTCGTTATATGGGCTACACCTCGCTTCCAGGATAGTAGGCGAGTAATAACGGAGTTGGTTGATCCCCAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGGTAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCCGACACTCGACCAACCATGAGCGAGGTTGTTCAGATTCTTTCGAGTATTTCCCCGGGAAAATCTAGGAGGAGAAGAAACATTCCAGCCAGCCTCTTTCAGGAACCAGAAGATGCACAAAAGCAAAGGCAAGCTCCACCTAGTAAATTTCCAACACATAGTTCAATGCCAATATATAATGATCACAATCTTTCTGTTGAGAACAAAAATAAAGCAGAAGATGCACTTTCAGCTGAGTATATGGAGAGTTTGATCCTCTTGACTTCGAAATCTGATGGCTCTTGTGCATCAGAAGAGGAAATAGTAGACCTGACTGAGCCTAGGTTTGAATCATTTTGCATCACAAATGGCAATGTCCCATGA 1839 0.3942 MKPQLKIALALVISLLWIQHSFCDENSETSSLNKWRCRCSFQGNQSYSLANCSKSCDCHSDSEESASVWTCVCDSNGFPQVAADGRSSNCFSTCNCTWGTVSRPGGSKKHVSSKIVVVILLICVICTTMAFLVSLICHVYRKDRCTIQSPIFSTDKETSSGSTTNLISHRSGASSVPETKYAINSPIYHITGCFQKASFLFGSPKETYHGNIFPFSLAELENATENFSSSNLIGVGGSSYVYLGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLARLHHCHLVPLLGYCSELKGKHVQRLLVFDYMANGNLRDCLDGVSGKHIDWATRVMIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDDLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRHPIHKSTGKEESLVIWATPRFQDSRRVITELVDPQLKGNFPEEEVQVMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSRRRRNIPASLFQEPEDAQKQRQAPPSKFPTHSSMPIYNDHNLSVENKNKAEDALSAEYMESLILLTSKSDGSCASEEEIVDLTEPRFESFCITNGNVP 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00685 612 Pfam Protein kinase domain 229 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00685 612 SMART serkin_6 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00685 612 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Gma12g00685 612 MobiDBLite consensus disorder prediction 523 546 - -
Gma12g00685 612 PANTHER OS01G0253100 PROTEIN 2 606 IPR045271 GO:0004714|GO:0006468
Gma12g00685 612 ProSiteProfiles Protein kinase domain profile. 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00685 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Gma12g00685 612 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 606 - -
Gma12g00685 612 SUPERFAMILY Protein kinase-like (PK-like) 207 506 IPR011009 -
Gma12g00685 612 Gene3D Phosphorylase Kinase; domain 1 202 307 - -
Gma12g00685 612 CDD STKc_IRAK 233 509 - -
Gma12g00685 612 Gene3D Transferase(Phosphotransferase) domain 1 308 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00685 Gma-Chr12 6047135 6053289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00685 1 608 Receptor kinase-like Gene Family AT2G28250 51.629 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gma12g00685 Pkinase 8.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00685 - - gmx:100817870 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00685 12 6047135 6053289 Gma12g00685 12 6047135 6053289 ECH
Gma12g00685 12 6047135 6053289 Gma11g01628 11 17589686 17594224 GST
Gma12g01654 12 36712449 36716889 Gma12g00685 12 6047135 6053289 PCT
Gma12g00685 12 6047135 6053289 Gma12g01654 12 36712449 36716889 PCT