Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00681 ATGGCTGCTGATTGTTCAAGATTTGTAAGATTTCAAGATGATGCTGAATTAGCAAAATTGCCAACAACAAATGGCGGCAATGGAATCAAGCCTAATGAAACACAAGTAGCTGAGACTAGCGGCGAAAAGGGTCTGAAGAAGGACACAAGGAAGTTCCTGAAGGCTAGAGTATTGTCAAGAGTATTCTCAGAGGATTATGAGAAAGTTAGAAAAAGAACATTATTAGATCCCCGGGCACAAACCATTCACCGTTGGAACAAGATTCTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGATCCTCTATTCTTTTATTTACCACTAGTTCGAGATGAAGTATGCATCGATATTGGGACAACACTTGAAGTTTTCCTCACAATGATAAGATCAATGGCAGATGTGTTTTACATGATTCAGATTCTCTTGAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCTCGGGTATTTGGGAGGGGAGATCTTGTTATAGACTCTTCTAAGATAGCTACTAGGTACCTGATCAAGGGTTTTTGGTTAGACTTTGTTGCTGCATTGCCTCTTCCTCAGGCGTTAATTTGGATTGTCATCCCCAATCTTGGAGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGCTTTATCATCATTTTCCAATATTTGCCAAGGCTGTTTCTGATTTTTCCACTTTCATCCCAAATTATAAAAGCTACAGGGGTTGTGACAGAAACAGCTTGGGCAGGGGCTGCTTACAACTTGGTGCTTTACATGTTAGCTAGCCATTTTTTAGGAGCTAGCTGGTACCTTCTATCAATTGAAAGACAAGAAGCATGCTGGAGGAGTGTCTGCGATATGGAGGAGCCATCTTGTCAATATGGATTCTTTGACTGCAAAAGGGTTGAAGATTCGCTCAGGGCGTCCTGGTTTATAGCAAGTAATATCACAATTTTATGCTCACCAAAGGCTAACTTCTATCAGTTTGGTATATACGGTGATGCAGTGACATCCCAAGTTACAACCTCGTCATTCTTTCATAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTCGGATTGCTGATTGGTAATATGCAGACATACCTGCAATCAACAACTGTTCGCTTAGAAGAGTGGAGGGTTAGAAGAACTGATACAGAACAATGGATGCATCACAGGCAGCTTCCTCCAGAACTAAGACAATCTGTTCGCAAATATAACCAATATAAGTGGCTGGCTACACGAGGGGTAGATGAAGAAGCTCTTCTCAAAGGACTTCCAGCTGATCTGAGGAGAGACATCAAGCGCCACCTTTGTCTGGAACTAGTTCGACGAGTCCCATTGTTTGATCAAATGGACGAGAGAATGCTGGACGCAATCTGCGAGAGACTAAAACCTGCACTGTGCACAGAAAACACATACCTTGTTCGCGAGGGAGATCCGGTGAACGAGACCCTCTTCATAATCAGAGGCCACCTTGATTCCTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCCTGCCACATCGGCCCCGGCGATTTCTGCGGCGAGGAGCTCCTAACATGGGCCTTAGGGTCCCGTCCAAGCTTCATTCTCCCCTCCTCTACTCGCACCGTCAAGGCCATCTCAGAAGTCGAAGCCTTCGCTCTCATGGCCGAAGACCTCAAGTTCGTTGCGTCGCAGTTCCGAAGACTGCACAGCAAACAACTCAGACACAAGTTCAGGTTTTACTCGCACCAGTGGAGAACGTGGGCTGCATGTTTCGTACAAGCTGCATGGAGGCGATACAAGAAGCGAAAGGAAGCTGCGGAACTGAGAGCGAGGGAGAATGTTCATGAGGGTGAGACAGCAGCGTATAGATCAGGGTTGGTGGTTGTGTATGCTACGAGGATGGCTAGGAAGGGTGTGCATCATGTGCGTTCTGGAACAGATTCTGGAGTTTCTTTGCAGAAGCCAGAAGAACCGGACTTTTCTGTTGATGAGTGA 2079 0.4512 MAADCSRFVRFQDDAELAKLPTTNGGNGIKPNETQVAETSGEKGLKKDTRKFLKARVLSRVFSEDYEKVRKRTLLDPRAQTIHRWNKILLVACLVSLFVDPLFFYLPLVRDEVCIDIGTTLEVFLTMIRSMADVFYMIQILLKFRTAYVAPSSRVFGRGDLVIDSSKIATRYLIKGFWLDFVAALPLPQALIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIIKATGVVTETAWAGAAYNLVLYMLASHFLGASWYLLSIERQEACWRSVCDMEEPSCQYGFFDCKRVEDSLRASWFIASNITILCSPKANFYQFGIYGDAVTSQVTTSSFFHKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFGLLIGNMQTYLQSTTVRLEEWRVRRTDTEQWMHHRQLPPELRQSVRKYNQYKWLATRGVDEEALLKGLPADLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTENTYLVREGDPVNETLFIIRGHLDSYTTNGGRTGFFNSCHIGPGDFCGEELLTWALGSRPSFILPSSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKEAAELRARENVHEGETAAYRSGLVVVYATRMARKGVHHVRSGTDSGVSLQKPEEPDFSVDE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00681 692 MobiDBLite consensus disorder prediction 25 39 - -
Gma12g00681 692 ProSiteProfiles IQ motif profile. 613 641 IPR000048 GO:0005515
Gma12g00681 692 SUPERFAMILY Voltage-gated potassium channels 82 399 - -
Gma12g00681 692 ProSiteProfiles cAMP/cGMP binding motif profile. 477 559 IPR000595 -
Gma12g00681 692 MobiDBLite consensus disorder prediction 670 692 - -
Gma12g00681 692 Gene3D - 88 401 - -
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 140 149 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 257 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 346 363 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 372 383 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 390 399 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 PRINTS EAG/ELK/ERG potassium channel family signature 440 447 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g00681 692 Gene3D Jelly Rolls 475 595 IPR014710 -
Gma12g00681 692 MobiDBLite consensus disorder prediction 22 42 - -
Gma12g00681 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 692 - -
Gma12g00681 692 Gene3D Helix hairpin bin 404 468 - -
Gma12g00681 692 Pfam Ion transport protein 85 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma12g00681 692 PANTHER - 9 692 - -
Gma12g00681 692 SMART cnmp_10 477 608 IPR000595 -
Gma12g00681 692 SUPERFAMILY cAMP-binding domain-like 407 603 IPR018490 -
Gma12g00681 692 CDD CAP_ED 477 608 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00681 Gma-Chr12 6000894 6006235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00681 51 691 Ion Channels AT2G28260 76.050 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00681 K05391 - gmx:100791992 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00681 12 6000894 6006235 Gma12g00681 12 6000894 6006235 ECH
Gma13g02890 13 43477782 43481491 Gma12g00681 12 6000894 6006235 PCT
Gma12g01651 12 36692363 36696317 Gma12g00681 12 6000894 6006235 PCT
Gma12g00681 12 6000894 6006235 Gma13g02890 13 43477782 43481491 PCT
Gma12g00681 12 6000894 6006235 Gma12g01651 12 36692363 36696317 PCT