Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00679 ATGGGATTTGGTCGAAATTCGACCTCGAGAAGCGGTGATTACTTGGAAGGGATGCTCAATGACTATGTTGGGGGAAGGAACAAACTGAAGGCTCAGAAAAGTGCTGCCACAACTAAGTTTGTGGCAGCACTCACGTGCCTTCAATTTTTCTTTGCAGTCTATGCAACATTCCTATTGTATTACATGGGCCCTTCCATCGATTTAAGAACCAAGCCAGAGTTCACATGGGCTACAAAAATTGCCCAACAATGGAAGCAACTCATGATCACACCCCATGTTATTGGTCACTACCAAGAAGCTGCTTCCTCTCTCATCAAGGAGGATCTTCTTCCCACAACTCCTTCCCAAGTGTGTGAGAATGAGAAAATAGACTTCATGCAAAAGAAGTCCAATGATGTCCAAATGATAAAGATAAAGAGAGAGCTCTACGATGAGGTGTTGAACTTCCAAAGCAAAACCATTGGCACCGAGACTCTCCAAGAGCTAATGGCAATGAAATCCAAATGGGACTTAAAGGGTCCAAAGAGGCCAAAAATCACAGTGTTGCTAAACCACTTCAAGCGAAAGACACTTTGTGCACAGCTTGATTCTTTGCTCCAACAAACCCTCCCTTTTCATCATGTTTGGGTGCTCTCATTTGGGAGCCCCAATGAGGTCTCATTGAAGAGAATTGTGGACACCTATAACGACTCGAGAATCAGCTTCATAAGCTCAAGCTATGATTTCAAGTACTATGGAAGGTTCCAAATGGCTCTTCAGACTGAGGCTGATCTTGTTTATGTTGTTGATGATGACATGATTCCTGGAAGGAAGATGCTGCAGATTTTGGCACACGTGGCTGGGACAGACAAGTACAAGAATTCTGTTTTGGGGAGTATTGGAAGGATATTGCCCTTTAGACAGAAGGATTTCACTTTCCCAAGTTACAGAAAATTTCGGTCTAAGGAGGCAGGGTTGTATTTGCCCGATCCTGCTTATGATATCACTGTTGATAAAATTGTGCAGGTGGATTTTCTTTCTAGTTCATGGTTTCTCTCAGCTGATCTTGTCAAGACACTCTTCATTGAGACACCTTTTACCTTCTCAACTGGTGAAGATCTTCACCTCAGCTATCAGCTTCAAAAGTACAAAAATGCTGGCTCATTTGTTCTTCCAGTGGATCCTAAGGACAAGGAAACTTGGGGTGATAGTGAACACAGGCTTGCATATGTGTCTGAAACCACAGTGATTTTCAAGGATGTGGTTCAAGTCAGAGATGATCAATGGTGGAAAGCACTTTCCACAGGTTATGTGACTCAGTGGGCTGCAATGTACCCTCAAAAAATTGATGCACTCTTCTATGCTCACTCAGTTGATGAAGTGAAAGTCCTTGCACCACTTCTTGAAAAGTTCAGGTCCACAGTTGGCAAGAAGGCCTACATTGTTGTCTCTGGAGGCAATTACTGCCCTTGTGAAGATGCTGCAAGAGCTCTCAAATGGCCTGCATTGGTCTGCAAGGAACGCCGGTTTAAGATTTTTGATTTGGCCGTCGAAGCCCTTTCAGGGGTGTCAGATTCTGAGGCACCAGTGATACATGCAGTGTACACCAGCTTGAAGGGTTTGATCAAAATTCACAATCCCAGTTTAGTGATCAGTGTGGCTGAAATTGACCCTCATGTGAGAAAAGCTCTCAAGATGGCCTCAGAAACCAACTCAAATGGCACCACATTTGTTCTTTTACCAAGTTCTTCAGTTTCTCAAGTTCTTTGGATGGCTGATCTGCGTTCAACAGCATTACCAAATTGGAATCGGATGAGGATCTCTGTGAACATCATCACACAAAATAGAGTCAATTCACTAGCAAGGCTTCTCAAATCTCTCAGCAATGCCTACTATCTTGGAGATGAAATCCCCATTACTTTTAACATGGATAGCAAGGTAGATGAGGCAACTATAAGACTAGTAGGTTCATTTGAGTGGCCTCATGGGACCAAAACCCTGAGAAGGAGAATCGTCCAAGGAGGGCTCATCCGGGCTGTGAGTGAGAGTTGGTATCCATCTTCTGATGATGACTTTGGACTCCTACTAGAAGACGACATTGAAGTTTCCCCTTACTACTACCTATGGATCAAATATGCACTCATGGCTTACCACTATGACCCCCAAGTCTCTCTCCCTGAGCTCTCCTCCATCTCCCTCTACACTCCAAAACTTGTTGAAGTTGTCAAAGAGAGGCCAAAATGGAATGCCACAGAATTCTTCAAACACATCCACCCCAACACACCTTACCTTCATCAACTACCTTGCAGCTGGGGGGCAGTGTTCTTCCCCAAGCATTGGAGAGAGTTCTATGTGTACATGAACATGAGGTTCACTGAGGATGCCAAGGCCAACCCAGTTCAAATTCCAAAGTCTAGAACAAATGGATGGCAAGCTTCATGGAAGAAGTTCCTCATAGACATGATGTACCTTAGAGGGTATGTTAGTCTCTACCCAAATTTCCCACAACAAGCAAGCTTTTCAACCAACCATATGGAACCAGGGGCACACATTAGTGCAAAAGACAATGTGGTTAAGCACAACAAACGAGACTTTGAGGTGCCACTAATGAAAGAAGACTTTAGAAACTTTTTGCCAGCAATGAAAATGCCTCCAGCACCAAGGCTTCCATCTCTGAACCTCTTCAATCAACCAGTTTCTCTAAAGGGTCTCAAAGCTGCTGGAGCTAAGTTGGGACAAGATGTGCTTAGATGTGACAATGCCACTGAGGTTGTTGCTGTTGACAAAGATACTGTTGCGCCAATTTCACCTGTCCTCTCCTCTCTCTGTCACCGTATTGCATGTATGAAGGACTGTTGGTTTTTTTACAATAATTTTAATGGTCTGTCGGATGAGAGTCTCGATGATGTGATGGACATGGAGTTTTTGGATTTGCCCCTTGACTTTGAGGATGTGGAAACTGATGCTGTGGAGGAACAAGATTGGGATGCTCAGTTCAACAAATTCCTTGAAGACCCACCCCCACCACTTGGATCATTTCCACTACAATCCTCTGAGTTCTGTGGACAAACTCAACATGAGAATGTGAAACTCGGCAAGAGCTTTCGTGCTTCTCTACCAAAGACTGTCAGACCTACATATGGCAAAACTATTCCTATCCAGAATGTCTCTTTAAAAGGAAAAGATTTGCTCCAATTCCAAACCAACAGCCCAATTTCTGTTTTTGAAAGCAGTAGTAGTTCTCCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCCGAAACAAACGCCAGCGTCTCTCAAACATCAGCCTGCTTTTCTCTATTCCTTTTATCCTTACTTCACCGACTTTTCAAAAATGTCAGAGGATGATTTTCTCCGAATCAGATTTACAAACACAACCTGCTGGGGAATTATTGTGCATGGTCTCAAAGAAGCTGAGGAAAAAGGATATTCCCATGCTAGCTAACAGAATTGAGATGAAGAGATCCTCGTCACAGGAGTCAGTTGCACTCAGGAAATGCTTACATTGTGAGGTGACAAAGACGCCGCAATGGAGAGAGGGACCAATGGGTCCTAAGACCCTATGCAACGCCTGTGGGGTTCGATACCGATCTGGCCGGCTATTTGCTGAATACCGGCCTGCAGCTAGCCCCACTTTTGTATCATCATTGCACTCAGACTCTCACAAGAAGGTTTTAGAAATTAGGAACAGAGCCACCCAAGTGACTGTTAGATAA 3738 0.4406 MGFGRNSTSRSGDYLEGMLNDYVGGRNKLKAQKSAATTKFVAALTCLQFFFAVYATFLLYYMGPSIDLRTKPEFTWATKIAQQWKQLMITPHVIGHYQEAASSLIKEDLLPTTPSQVCENEKIDFMQKKSNDVQMIKIKRELYDEVLNFQSKTIGTETLQELMAMKSKWDLKGPKRPKITVLLNHFKRKTLCAQLDSLLQQTLPFHHVWVLSFGSPNEVSLKRIVDTYNDSRISFISSSYDFKYYGRFQMALQTEADLVYVVDDDMIPGRKMLQILAHVAGTDKYKNSVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSADLVKTLFIETPFTFSTGEDLHLSYQLQKYKNAGSFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDVVQVRDDQWWKALSTGYVTQWAAMYPQKIDALFYAHSVDEVKVLAPLLEKFRSTVGKKAYIVVSGGNYCPCEDAARALKWPALVCKERRFKIFDLAVEALSGVSDSEAPVIHAVYTSLKGLIKIHNPSLVISVAEIDPHVRKALKMASETNSNGTTFVLLPSSSVSQVLWMADLRSTALPNWNRMRISVNIITQNRVNSLARLLKSLSNAYYLGDEIPITFNMDSKVDEATIRLVGSFEWPHGTKTLRRRIVQGGLIRAVSESWYPSSDDDFGLLLEDDIEVSPYYYLWIKYALMAYHYDPQVSLPELSSISLYTPKLVEVVKERPKWNATEFFKHIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNMRFTEDAKANPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPQQASFSTNHMEPGAHISAKDNVVKHNKRDFEVPLMKEDFRNFLPAMKMPPAPRLPSLNLFNQPVSLKGLKAAGAKLGQDVLRCDNATEVVAVDKDTVAPISPVLSSLCHRIACMKDCWFFYNNFNGLSDESLDDVMDMEFLDLPLDFEDVETDAVEEQDWDAQFNKFLEDPPPPLGSFPLQSSEFCGQTQHENVKLGKSFRASLPKTVRPTYGKTIPIQNVSLKGKDLLQFQTNSPISVFESSSSSPSVENSNFELPVIPTKRPRNKRQRLSNISLLFSIPFILTSPTFQKCQRMIFSESDLQTQPAGELLCMVSKKLRKKDIPMLANRIEMKRSSSQESVALRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVSSLHSDSHKKVLEIRNRATQVTVR 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00679 1245 CDD Glyco_tranf_GTA_type 189 280 - -
Gma12g00679 1245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1172 1226 - -
Gma12g00679 1245 SUPERFAMILY Nucleotide-diphospho-sugar transferases 597 789 IPR029044 -
Gma12g00679 1245 SUPERFAMILY Nucleotide-diphospho-sugar transferases 176 377 IPR029044 -
Gma12g00679 1245 SMART GATA_3 1168 1218 IPR000679 GO:0006355|GO:0043565
Gma12g00679 1245 Gene3D - 1170 1218 IPR013088 GO:0006355|GO:0008270
Gma12g00679 1245 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 599 848 IPR029044 -
Gma12g00679 1245 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 163 386 IPR029044 -
Gma12g00679 1245 PANTHER - 28 927 - -
Gma12g00679 1245 CDD ZnF_GATA 1173 1220 IPR000679 GO:0006355|GO:0043565
Gma12g00679 1245 ProSiteProfiles GATA-type zinc finger domain profile. 1168 1204 IPR000679 GO:0006355|GO:0043565
Gma12g00679 1245 PANTHER OSJNBA0004B13.7 PROTEIN 28 927 - -
Gma12g00679 1245 Pfam GATA zinc finger 1174 1207 IPR000679 GO:0006355|GO:0043565
Gma12g00679 1245 ProSitePatterns GATA-type zinc finger domain. 1174 1199 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00679 Gma-Chr12 5957363 5968888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00679 950 1238 C2C2-Gata Transcription Factor Family AT1G08010 35.932 1.55e-42 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma12g00679 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00679 - - gmx:100790938 1857.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00679 12 5957363 5968888 Gma12g00679 12 5957363 5968888 ECH
Gma12g00679 12 5957363 5968888 Gma11g01631 11 17647194 17651296 GST