Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00677 ATGAAGGAAGGTGAAAAGGTATTGGATCCGCAGCTATGGCACGCGTGTGCAGGTGGCATGGTTCAGATGCCGCAAATGAACTCCAAAGTCTTCTACTTCCCACAGGGTCACGCCGAACACGCCCACACCAACATTCATCTGAGGCTTCCACCATTCATTTTATGCAACGTTGAAGCAGTTAAGTTCATGGCGAACCCAGAAACCGACGAAGTGTTCGCGAAGCTGAGTTTGCTTCCTCTCAGAAACTCGGAACTCGGTGCTGACTCGGACGGTGCTGGTGGTGATGACGTGGCAGAACCTTCTTGTTGTGAAAAGCCTGCGTCTTTCGCTAAGACTCTGACTCAGAGCGACGCCAACAATGGTGGGGGGTTTTCGGTTCCGCGGTACTGCGCGGAGACAATTTTCCCGCGTCTGGACTACACGGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAAGACGTGCACGGCGAGACCTGGAGGTTCCGGCACATCTACCGAGGGACGCCACGTAGGCACTTGCTGACCACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCTGGGGATTCCGTTGTGTTTCTGAGGGCTGAGAATGGTGATTTGTGTGTTGGGATTCGGAGGGCAAAAAAGGGAATTAGCGAGGGTTCAGGTTCAGGTTCATCATCTGTGTGGAGTTCAGCTTCTGGGTCTGGAAATGGAAATTGTGGGATTGGGCCTTATGGGCCTTTTTCTTTTTTCTTGAAAGAAGAAAACAAAATGTTAAGGAATGGTTGTGGTGGGAATTTGAGTGGAAGGGTGAAAGTGAGGGCTGAGGATGTTGTTGAAGCTGTGACTCTTGCTGCTAGTAATAAGCCTTTTGAGGTTGTGTATTACCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGCTTCTGCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCAAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGACCCCATCCGCTGGCCTAATTCCCCTTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGCTTGTTGAGTTGGTATCTAACATTCCACTCATTAATTTCACACCCTTCTCTCCACCAAGAAAGAAGCTGCGGCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCAATGTTTTCAGGCAACCAGCTTGGGCCTAACAGCCCCTTGTGTGGTTTTTCGGATAATGCTCCTGCAGGGATACAGGGAGCCAGGCATGCTCAATTTGGAAAATCTCTATCAGATCTCCACCTTAACAATAAACTGCAGTTGGGGATGCTTCCAACTAATATCCATCAACTTGGAGTGTATAATGAGATTTCAAATGGTAACATGATGACCAACCATGATAAGAGCAAAGAAAGTTTATCATGCTTTCTGACCATGGGGAAATCTACCAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCAGTTTTTGCTTTTTGGTCAACCAATTCTCACTGAGCAACAAATTTCTAGCTGTTCTGGAGATGTGTTGTCTCACCGAAAAAGATCGGTAAGTGATGATAAGGACAAAGCGAAGTGCCTTATGGATGACTCGCAATCTACACTCTCACAGCAGTTTTCACCAGGAAAAGCATCTTCTGCTGAGTTCTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAAGTTTTCTTGGAGTCGGAAGATGTAGGAAGGACCCTAGACCTATCGCTGTTTGGTTCTTATGAAGATCTGTATAGGAGACTTGCCATCATGTTTGGGATTGAAAGGTCTGAGATTTTGAACCATGTGCTCTACCATGATGCAGCTGGTGCTGCTAAGAAAACCGGAGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAGCAGCAAAAACATTAAAAGGGCCTTTATTACAGGAACTCGTAATGGTGAACATGGACTAGATGCATCAAACAAAACAGGCCCTCTGAGCATATTTGCTTAA 2106 0.4706 MKEGEKVLDPQLWHACAGGMVQMPQMNSKVFYFPQGHAEHAHTNIHLRLPPFILCNVEAVKFMANPETDEVFAKLSLLPLRNSELGADSDGAGGDDVAEPSCCEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKKGISEGSGSGSSSVWSSASGSGNGNCGIGPYGPFSFFLKEENKMLRNGCGGNLSGRVKVRAEDVVEAVTLAASNKPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPLINFTPFSPPRKKLRPQHPDFPLDVQFPIPMFSGNQLGPNSPLCGFSDNAPAGIQGARHAQFGKSLSDLHLNNKLQLGMLPTNIHQLGVYNEISNGNMMTNHDKSKESLSCFLTMGKSTKSLEKSDDVKKHQFLLFGQPILTEQQISSCSGDVLSHRKRSVSDDKDKAKCLMDDSQSTLSQQFSPGKASSAEFSWQLGLDTGHCKVFLESEDVGRTLDLSLFGSYEDLYRRLAIMFGIERSEILNHVLYHDAAGAAKKTGEEPFSDFMKTAKRLTILTDSSSKNIKRAFITGTRNGEHGLDASNKTGPLSIFA 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00677 701 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Gma12g00677 701 SUPERFAMILY DNA-binding pseudobarrel domain 105 210 IPR015300 -
Gma12g00677 701 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma12g00677 701 PANTHER AUXIN RESPONSE FACTOR 2 678 - -
Gma12g00677 701 ProSiteProfiles PB1 domain profile. 589 669 IPR000270 GO:0005515
Gma12g00677 701 Gene3D - 588 674 - -
Gma12g00677 701 Gene3D - 316 388 - -
Gma12g00677 701 SMART B3_2 109 211 IPR003340 GO:0003677
Gma12g00677 701 CDD B3_DNA 108 209 IPR003340 GO:0003677
Gma12g00677 701 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Gma12g00677 701 Gene3D - 107 211 IPR015300 -
Gma12g00677 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 678 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00677 Gma-Chr12 5940115 5943771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00677 1 673 B3 DNA Binding Superfamily AT4G30080 58.601 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma12g00677 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00677 - - gmx:100814686 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00677 12 5940115 5943771 Gma12g00677 12 5940115 5943771 ECH
Gma11g01633 11 17685358 17688537 Gma12g00677 12 5940115 5943771 ECH
Gma19g01716 19 46454120 46457693 Gma12g00677 12 5940115 5943771 ECH
Gma10g00491 10 4885321 4890628 Gma12g00677 12 5940115 5943771 ECH
Gma12g00677 12 5940115 5943771 Gma11g01633 11 17685358 17688537 GST
Gma13g02897 13 43555246 43558047 Gma12g00677 12 5940115 5943771 PCT
Gma12g01641 12 36558721 36561798 Gma12g00677 12 5940115 5943771 PCT
Gma12g00677 12 5940115 5943771 Gma13g02897 13 43555246 43558047 PCT
Gma12g00677 12 5940115 5943771 Gma12g01641 12 36558721 36561798 PCT