Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00674 ATGGCTATGGCTGTGGCTCAACACAGAGAAAGTAGCAGCAGTGGAAGCATTGACAAACACTTAGATTCTGGCAAGTATGTGAGGTACACTGCCGAGCAAGTTGAGGCTCTTGAAAGGGTCTATGCTGAGTGCCCTAAGCCTAGTTCTCTGAGAAGGCAACAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGCAGGTGTAGGGAGAAGCAGAGAAAAGAGGCATCTAGGCTTCAGACTGTGAACCGCAAACTCACTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTTGTGTGTGAGAATGGGTTTATGAGGCAGCAATTGCATACTCCATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCTCAGCATACCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGAAACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGTGACTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCTGCTGGAAATGGAGGAACCATTGAACTTGTTTACACGCAGGTGAGCCTCAAATTTAAGACTTATTTGTTGGTTCTGTTTTTTTTTTTTGTTCCTATGATTATACTTAATTtGCTACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGGTTTGTGAGAGGTCCCTGTCTGGTTCTGGAACAGGCCCTAATCCAGCTGCTGCTGCTCAGTTTGTAAGAGCTGAAACACTTCCTAGTGGCTACTTAATCCGACCATGTGAGGGTGGAGGGTCAATCATTCACATAGTGGACCACCTAAATCTGGAGGCATGGAGTGTGCCAGAAGTGTTGCGGCCACTTTATGAATCATCCAAGGTGGTTGCTCAGAAAATGACAATTGCAGCGCTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAGGTGGTTTACGGATTGGGTAGGCAGCCTGCTGTTCTGCGGACTTTCAGCCAGAGATTGAGCAGAGGCTTCAATGACGCTGTAAATGGATTCAATGATGATGGGTGGACTGTATTGAACTGTGATGGTGCCGAGGATGTATTTATTGCAGTTAATTCAACCAAGAATTTGAGTGGCACTTCTAACCCAGCAAGTTCCCTTACATTCCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTGCTTCAAAATGTCCCTCCTGCAGTTTTGGTTCGTTTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAGTGTTGATGCTTATTCTGCTGCATCACTGAAAGCCGGCACCTATGCCTATCCAGGGATGAGGCCTACAAGATTTACTGGCAGTCAAATAATTATGCCTCTTGGTCATACAATTGAACATGAAGAGATGCTGGAAGTTATTAGGCTGGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAGAATGCTGTGGGGGCTTGTTCTGAGCTTGTATTTGCTCCAATTGATGAAATGTTCCCCGATGATGCTCCATTGATTCCTTCTGGTTTCCGCATTATCCCATTAGATTCAAAACCAGGTGACAAAAAGGAAGTTGCTACAAATCGGACCCTGGATTTGACATCTGGTTTTGAAGTGGGTCCTGCAACAACTGCTGGCACAGATGCATCATCCAGTCAAAACACTCGATCAGTGTTGACTATTGCCTTCCAGTTCCCTTTCGACAGCAGTCTGCAAGACAATGTCGCAGTCATGGCACGTCAGTATGTCCGCAGTGTGATTTCTTCCGTGCAGAGGGTTGCCATGGCTATATCACCATCTGGTATAAGCCCATCTGTTGGAGCTAAACTTTCTCCTGGTTCTCCAGAGGCTGTTACACTAGCTCACTGGATCTGCCAAAGTTATAGGCGAGTCTACCTATCTAGCTGGTCTGACTTACTGAGATCCGATTCTCTTGTGGGTGACATGATGCTGAAACAACTGTGGCATCATCAGGATGCAATTCTATGCTGTTCACTGAAGGCAAGCAAGCTTCCATTGCCAGTGTTCATATTTGCAAATCAAGCTGGCCTTGACATGTTGGAAACAACTCTAGTAGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGGCTGGACGCAAGGCATTGTGTACAGACTTTGCCAAGTTAATGGAGCAGGGATTTGCTTATCTGCCAGCTGGAATCTGCATGTCGACGATGGGACGCCATGTGTCATATGACCAAGCCATCGCATGGAAAGTGCTTACTGGAGAAGACAACACTGTTCACTGCCTGGCTTTCTCTTTCATAAATTGGATCAGTGCTAGAGTGAAGTTCAGACTTGAATGA 2646 0.4599 MAMAVAQHRESSSSGSIDKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTPSAATTDASCDSVVTTPQHTMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVSLKFKTYLLVLFFFFVPMIILNLLQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGTGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWTVLNCDGAEDVFIAVNSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFSVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLIPSGFRIIPLDSKPGDKKEVATNRTLDLTSGFEVGPATTAGTDASSSQNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGISPSVGAKLSPGSPEAVTLAHWICQSYRRVYLSSWSDLLRSDSLVGDMMLKQLWHHQDAILCCSLKASKLPLPVFIFANQAGLDMLETTLVALQDITLDKIFDEAGRKALCTDFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNTVHCLAFSFINWISARVKFRLE 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00674 881 Gene3D - 18 91 - -
Gma12g00674 881 SUPERFAMILY Homeodomain-like 24 87 IPR009057 -
Gma12g00674 881 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 282 872 IPR044830 GO:0003700
Gma12g00674 881 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 261 IPR044830 GO:0003700
Gma12g00674 881 Gene3D - 192 402 IPR023393 -
Gma12g00674 881 SMART HOX_1 22 88 IPR001356 GO:0003677
Gma12g00674 881 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 282 872 - -
Gma12g00674 881 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 261 - -
Gma12g00674 881 Pfam START domain 164 397 IPR002913 GO:0008289
Gma12g00674 881 CDD START_ArGLABRA2_like 158 400 - -
Gma12g00674 881 Pfam MEKHLA domain 723 871 IPR013978 -
Gma12g00674 881 Coils Coil 94 121 - -
Gma12g00674 881 SMART START_1 163 399 IPR002913 GO:0008289
Gma12g00674 881 CDD bZIP 77 116 - -
Gma12g00674 881 ProSiteProfiles START domain profile. 154 408 IPR002913 GO:0008289
Gma12g00674 881 CDD homeodomain 25 85 IPR001356 GO:0003677
Gma12g00674 881 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Gma12g00674 881 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Gma12g00674 881 SUPERFAMILY Bet v1-like 159 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00674 Gma-Chr12 5901876 5907660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00674 1 871 Homeobox Transcription Factor Family AT5G60690 78.953 0.0 1416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma12g00674 START 2e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00674 K09338 - gmx:100813804 1632.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00674 12 5901876 5907660 Gma12g00674 12 5901876 5907660 ECH
Gma11g01637 11 17719700 17725610 Gma12g00674 12 5901876 5907660 ECH
Gma12g00674 12 5901876 5907660 Gma11g01637 11 17719700 17725610 GST