Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00671 ATGTTTGTTGACGTCGAAGGAGGAGTAAGAACTGAGGCTTTCACACGTGGAAAGATTTCAATGTTGATAAATTTGGTTTTGTGGCTGATCGTTTGTGTAGAAAGTCTGCTAAGAATGCCGCCGAAGTTCGACCCCTCCCAGATCGTCGACGTCTTCGTACGCGTCACCGGCGGTGAGGTCGGCGCGGCGAGTTCCCTCGCCCCGAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGATATCGCCAAGGAAACCGCCAAGGACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACCGTGCAGAACCGTCAGGCCAAGGTCACGGTGGTCCCATCCGCCGCCGCGCTCGTCATCAAGGCCCTCAAGGAGCCCGAGCGTGACCGCAAGAAAACGAAGAACATCAAGCACAACGGCAACATCTCGCTAGACGACGTCATCGAGATCGCTAGGGTTATGAGGCCGAGGTCAATGGCGAAGGACCTCAGCGGCAGCATTAAGGAGATTCTCGGGACGTGCGTCTCCGTCGGATGCACCGTTGATGGAAAGGATCCCAAGGACTTGCAGCAGGAGATTACCGATGGTGATGTTGAGGTCCCTCTCGATTAA 615 0.5626 MFVDVEGGVRTEAFTRGKISMLINLVLWLIVCVESLLRMPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEITDGDVEVPLD 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00671 204 Pfam Ribosomal protein L11, N-terminal domain 53 107 IPR020784 -
Gma12g00671 204 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 39 204 - -
Gma12g00671 204 ProSitePatterns Ribosomal protein L11 signature. 169 184 IPR020785 GO:0003735|GO:0005840|GO:0006412
Gma12g00671 204 PANTHER 60S RIBOSOMAL PROTEIN L12 39 204 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma12g00671 204 Hamap 50S ribosomal protein L11 [rplK]. 47 184 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma12g00671 204 Pfam Ribosomal protein L11, RNA binding domain 113 182 IPR020783 GO:0003735|GO:0005840|GO:0006412
Gma12g00671 204 SUPERFAMILY Ribosomal protein L11, C-terminal domain 114 187 IPR036769 -
Gma12g00671 204 Gene3D - 34 119 IPR036796 -
Gma12g00671 204 CDD Ribosomal_L11 51 182 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma12g00671 204 Gene3D - 120 202 IPR036769 -
Gma12g00671 204 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 37 125 IPR036796 -
Gma12g00671 204 SMART rl11c 51 183 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00671 Gma-Chr12 5855970 5857308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00671 39 202 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.634 1.50e-107 304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00671 12 5855970 5857308 Gma12g00671 12 5855970 5857308 ECH
Gma11g01641 11 17779264 17780128 Gma12g00671 12 5855970 5857308 ECH
Gma10g00487 10 4834976 4836229 Gma12g00671 12 5855970 5857308 ECH
Gma12g00671 12 5855970 5857308 Gma11g01641 11 17779264 17780128 GST